CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11045	Canola	nucleus	96.97	96.27
CDY03400	Canola	nucleus	83.09	85.44
CDY34330	Canola	nucleus	83.09	85.06
AT4G24970.1	Thale cress	nucleus	79.91	78.22
CDX84876	Canola	nucleus	65.32	59.63
CDX71661	Canola	cytosol	14.16	59.39
CDY45818	Canola	nucleus	65.17	58.19
VIT_17s0000g00910.t01	Wine grape	nucleus	65.46	54.58
KRH41106	Soybean	nucleus	63.87	53.9
KRH59787	Soybean	nucleus	64.16	53.75
Solyc03g097520.2.1	Tomato	nucleus	62.57	51.92
GSMUA_Achr11P...	Banana	nucleus	58.24	48.73
EES10563	Sorghum	nucleus	55.06	48.35
Zm00001d004118_P003	Maize	nucleus	55.49	48.12
TraesCS2B01G291200.1	Wheat	nucleus	54.62	47.91
Zm00001d053269_P001	Maize	cytosol	18.06	47.89
TraesCS2A01G273000.2	Wheat	nucleus	53.32	45.72
CDX81912	Canola	nucleus	16.33	45.02
HORVU2Hr1G066650.2	Barley	cytosol	52.02	44.78
CDY52039	Canola	plastid	43.79	44.1
CDX84021	Canola	plastid	43.64	43.77
TraesCS2D01G272300.3	Wheat	nucleus	53.47	43.63
KXG30181	Sorghum	nucleus	50.29	43.23
Os02t0469300-02	Rice	nucleus	49.28	42.47
CDX97228	Canola	nucleus, plastid	46.39	38.67
CDX69668	Canola	nucleus, plastid	46.39	38.58
VIT_13s0147g00080.t01	Wine grape	cytosol	22.4	38.46
CDY21683	Canola	nucleus	32.95	35.4
CDY59688	Canola	golgi, plasma membrane, plastid	8.96	35.03
CDY41018	Canola	nucleus	32.95	33.53
Zm00001d053268_P001	Maize	cytosol	23.99	31.56
CDX81913	Canola	nucleus	16.76	30.93
CDY59720	Canola	endoplasmic reticulum, extracellular	10.69	29.48
CDX75568	Canola	cytosol	32.8	16.85
CDX69218	Canola	cytosol	32.66	16.73

Protein Annotations

EnsemblPlants:CDX92664	EnsemblPlantsGene:GSBRNA2T00154475001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF7	PFAM:PF13589	ProteinID:CDX92664	ProteinID:CDX92664.1
SEG:seg	SUPFAM:SSF55874	UniParc:UPI0004EC9DC5	MapMan:12.5.1.2	:	:

Description

BnaC07g39220D

Coordinates

chrLK031873:+:235850..239843

Molecular Weight (calculated)

78409.2 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.708

Length

692 amino acids

Sequence
(BLAST)

001: MDNDVKPETI PPYIPRDDTV TLIDLCSSDD SDVEEHVAER RYNSVGAKRG RDTSSAWDRE NVKRGTVENE LAVVLPPGGF DQSVPPVNMT HTFPADPCNA
101: FSHMPAAGVS SGRVGSCKQF WKAGDYEGAP GGNWDLSSGG FDHVRVHPKF LHSNATSHKW ALGAFAELLD NALDEVATGA TYVNVDMLEN KKEGNRMLLI
201: EDNGGGMDPE KMRQCMSLGY SAKSKLANTI GQYGNGFKTS TMRLGADVIV FSRCPGKDGK SATQSIGLLS YTFLRSTGKE DIVVPMLDYK KSDPEWSKIV
301: RSSLSDWDKN VKTIIQWSPF SSEEDLLRQF GLMKDRGTRI IIYNLWEDDH GLLELDFDAD PHDIQLRGVN RDEKNIKMAA QFPNSRHFLT FKHSLRSYVS
401: ILYLRIPPAF RIILRGKDVE HHNVVNDMMQ TEQITYRPQY GADTYVKDSN MSAVVVLGFV KDAKHHVDVQ GFNVYHKNRL IKPFWRIWNA AGSDGRGVIG
501: VLEANFVEPA HDKQGFERTT VLSRLETRLV QMQKIYWSTN CHKIGYAPRR YKPVNGYSHR DTSPENDPEG SAPPGIKTRA SDKFYSSSYP SHHKGDNGVP
601: GKDSTLYLQE ELRREKERSK ALEDEVNIAR EKIEEMSKEQ ENLIEIFTEE RDRRDGEEEN LRKKLEETSN TIEELLNKIR KLEDSKGSSW RR

Best Arabidopsis Sequence Match ( AT4G24970.1 )
(BLAST)

001: MDNSIHVKRE IQLPSTSPAG FPGRESVTVV DLCSSDDDSD IGEVAGGLEK VGNNFVGLKR GRDTFGGSSE VDRNNVKKVT TLAELGVGLP EGFGQSNPPE
101: SLTHPIPANP CNVFRPVPPP PPPPYAGTSG KIGGCKQFWK AGDYEGAAGD NWDLSSGGFD HVRVHPKFLH SNATSHKWAL GAFAELLDNA LDEVASGATY
201: VKVDMLENNK GGNRMLLIED NGGGMDPEKM RQCMSLGYSA KSKLANTIGQ YGNGFKTSTM RLGADVIVFS RCPGKDGKSS TQSIGLLSYT FLRSTGKEDI
301: VVPMLDYERR DPEWSKIIRS STRDWDKNVE TIIQWSPFSS EEDLLHQFDL MKDRGTRIII YNLWEDDQGM LELDFDADPY DIQLRGVNRE ERNIKMASQF
401: PNSRHFLTYK HSLRSYVSIL YLRIPPGFRI ILRGIDVEHH SVVNDMMQTE QITYRPQSES YGVVTNMSAI VIIGFVKDAK HHVDVQGFNV YHKNRLIKPF
501: WRIWNATGSD GRGVIGVLEA NFVEPAHDKQ GFERTTVLAR LESRLVQMQK TYWSTNCHKI GYAPRRREKS AYGYDNRDSS PENDREGPSS IKTPTPASDK
601: FYSSSYPNHN GDNGVSGKDG ARLQEELRRE KERRKALEVE VQLSRQKIEE MKKEQENLIE IFSEERDRRD GEEEVLRNKL EEASNTIDDL LNKIKKMEGS
701: KVPSWRH

Arabidopsis Description

MORC7Protein MICRORCHIDIA 7 [Source:UniProtKB/Swiss-Prot;Acc:F4JRS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.