Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03400 | Canola | nucleus | 52.28 | 64.78 |
| CDY34330 | Canola | nucleus | 52.28 | 64.5 |
| Bra013851.1-P | Field mustard | nucleus | 52.16 | 62.59 |
| CDX92664 | Canola | nucleus | 51.92 | 62.57 |
| CDY11045 | Canola | nucleus | 52.28 | 62.55 |
| Bra019199.1-P | Field mustard | cytosol | 52.16 | 62.5 |
| VIT_17s0000g00910.t01 | Wine grape | nucleus | 61.63 | 61.93 |
| AT4G24970.1 | Thale cress | nucleus | 52.04 | 61.39 |
| KRH41106 | Soybean | nucleus | 57.43 | 58.41 |
| KRH59787 | Soybean | nucleus | 57.55 | 58.11 |
| CDX71661 | Canola | cytosol | 11.39 | 57.58 |
| CDX84876 | Canola | nucleus | 51.8 | 56.99 |
| Bra022762.1-P | Field mustard | nucleus | 51.68 | 56.79 |
| GSMUA_Achr11P... | Banana | nucleus | 55.76 | 56.23 |
| CDY45818 | Canola | nucleus | 51.8 | 55.74 |
| TraesCS2B01G291200.1 | Wheat | nucleus | 50.84 | 53.74 |
| EES10563 | Sorghum | nucleus | 50.72 | 53.68 |
| AT5G50780.1 | Thale cress | nucleus | 52.4 | 53.36 |
| Zm00001d004118_P003 | Maize | nucleus | 50.24 | 52.51 |
| TraesCS2A01G273000.2 | Wheat | nucleus | 50.0 | 51.67 |
| Zm00001d053269_P001 | Maize | cytosol | 15.83 | 50.57 |
| HORVU2Hr1G066650.2 | Barley | cytosol | 48.08 | 49.88 |
| Solyc01g009920.1.1 | Tomato | nucleus | 46.16 | 49.61 |
| TraesCS2D01G272300.3 | Wheat | nucleus | 50.0 | 49.17 |
| Os02t0469300-02 | Rice | nucleus | 46.52 | 48.32 |
| KXG30181 | Sorghum | nucleus | 45.2 | 46.83 |
| Solyc10g081760.1.1 | Tomato | nucleus | 46.88 | 46.22 |
| VIT_13s0147g00080.t01 | Wine grape | cytosol | 20.5 | 42.43 |
| Solyc02g084700.2.1 | Tomato | cytosol | 30.58 | 39.6 |
| Solyc06g071580.2.1 | Tomato | cytosol | 27.82 | 38.6 |
| Zm00001d053268_P001 | Maize | cytosol | 23.74 | 37.64 |
| Solyc01g099300.2.1 | Tomato | nucleus | 28.9 | 33.8 |
| Solyc02g082290.2.1 | Tomato | cytosol | 15.23 | 18.51 |
Protein Annotations
| EnsemblPlants:Solyc03g097520.2.1 | EnsemblPlantsGene:Solyc03g097520.2 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF7 | PFAM:PF13589 | SEG:seg | SUPFAM:SSF55874 |
| UniParc:UPI000276838B | UniProt:K4BJG9 | MapMan:12.5.1.2 | : | : | : |
Description
No Description!
Coordinates
chr3:+:59855409..59869256
Molecular Weight (calculated)
93301.6 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.827
Length
834 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSNIVIKQ EILEGFTKKP PEKSSPAPQS VFIDLSSSDD SDSDSGSDSG SISGNGSNRP KKKRKRVQDV NFALPLGFLD PLPPPKEPPL PLPAPPNGSN
101: TDLGVSGSSC KQFWKAGDYE GSSSASSVLK SGGIDHVRVH PKFLHSNATS HKWVLGALAE LLDNSLDEVS NGATYVNIDM VKNKKDGSRM LLIEDNGGGM
201: DPERMRHCMS LGYSVKSKMA DTIGQYGNGF KTSTMRLGAD VIVFSRSDGK PGKSPTQSIG LLSYTFLRNK GMEDIVVPML DYEKREGWDR IIRSSSDDWD
301: KNLETIIEWS PFSSEADLLR QFNPMKGQGT RIVVYNLWED DQGLLELDFD ADPHDIQIRG VNRDERSIQM AKQYPNSRHF LTYRHSLRSY ASILYLRVAP
401: GFRIILRGKD VEHHNIVNDM MMTQEVTYRP MPGADGVPKD SNMVATVKIG FVKDAKSHID VQGFNVYHKN RLIKPFWRLW HAPGSDGRGV IGVLEANFVE
501: PAHDKQGFER TTVLSRLEAR LVQMQKTYWS TLCHKIGYAP RRNKKAIARE DSPDYPSSAS QPKHNSSAKS SEKIYPSSAS QSKHNSSAKS SEKIYPSSAS
601: QSKHNSSAKS SEKSNVDGHL NGKHDGKIRR SRNIPSSLEP SSSAEDDSDD DVQVVLPKNK PVGHQNHTNG KDGPRVMHSP PGFGQRVAEQ VCSPGGNLKR
701: VTRSSRSKGD ADENEGMLPD NLTESLEQLK AENHELKERL RRKEEEILGD LLRDLQHERE RSKSLEAQLQ ESTRKLEELN KEQESLIDIF TEERQRRDME
801: EENLRKKLKD ASNTVQELLD KVQVLEKTRS ANYR
101: TDLGVSGSSC KQFWKAGDYE GSSSASSVLK SGGIDHVRVH PKFLHSNATS HKWVLGALAE LLDNSLDEVS NGATYVNIDM VKNKKDGSRM LLIEDNGGGM
201: DPERMRHCMS LGYSVKSKMA DTIGQYGNGF KTSTMRLGAD VIVFSRSDGK PGKSPTQSIG LLSYTFLRNK GMEDIVVPML DYEKREGWDR IIRSSSDDWD
301: KNLETIIEWS PFSSEADLLR QFNPMKGQGT RIVVYNLWED DQGLLELDFD ADPHDIQIRG VNRDERSIQM AKQYPNSRHF LTYRHSLRSY ASILYLRVAP
401: GFRIILRGKD VEHHNIVNDM MMTQEVTYRP MPGADGVPKD SNMVATVKIG FVKDAKSHID VQGFNVYHKN RLIKPFWRLW HAPGSDGRGV IGVLEANFVE
501: PAHDKQGFER TTVLSRLEAR LVQMQKTYWS TLCHKIGYAP RRNKKAIARE DSPDYPSSAS QPKHNSSAKS SEKIYPSSAS QSKHNSSAKS SEKIYPSSAS
601: QSKHNSSAKS SEKSNVDGHL NGKHDGKIRR SRNIPSSLEP SSSAEDDSDD DVQVVLPKNK PVGHQNHTNG KDGPRVMHSP PGFGQRVAEQ VCSPGGNLKR
701: VTRSSRSKGD ADENEGMLPD NLTESLEQLK AENHELKERL RRKEEEILGD LLRDLQHERE RSKSLEAQLQ ESTRKLEELN KEQESLIDIF TEERQRRDME
801: EENLRKKLKD ASNTVQELLD KVQVLEKTRS ANYR
001: MEPIVKQENP VTTSTLSTWK PAARNKTIPP PESVIELSSS NEGSELGENL DEIAEIQSVD RTGGDDVSGT KRARSDSIAS PAKRLAVMIP DDDEEFLLST
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR
Arabidopsis Description
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:TAIR;Acc:AT5G50780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.