CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41106	Soybean	nucleus	92.13	92.8
CDY03400	Canola	nucleus	53.63	65.82
CDY34330	Canola	nucleus	53.51	65.38
CDY11045	Canola	nucleus	54.24	64.28
Bra019199.1-P	Field mustard	cytosol	54.12	64.22
CDX92664	Canola	nucleus	53.75	64.16
Bra013851.1-P	Field mustard	nucleus	53.51	63.6
VIT_17s0000g00910.t01	Wine grape	nucleus	61.86	61.57
AT4G24970.1	Thale cress	nucleus	52.3	61.1
Solyc03g097520.2.1	Tomato	nucleus	58.11	57.55
CDX84876	Canola	nucleus	51.69	56.33
Bra022762.1-P	Field mustard	nucleus	51.57	56.13
CDX71661	Canola	cytosol	11.02	55.15
CDY45818	Canola	nucleus	51.57	54.97
GSMUA_Achr11P...	Banana	nucleus	54.12	54.05
EES10563	Sorghum	nucleus	50.61	53.05
TraesCS2B01G291200.1	Wheat	nucleus	50.48	52.85
AT5G50780.1	Thale cress	nucleus	52.18	52.63
Zm00001d004118_P003	Maize	nucleus	50.61	52.38
TraesCS2A01G273000.2	Wheat	nucleus	49.64	50.81
Zm00001d053269_P001	Maize	cytosol	15.98	50.57
HORVU2Hr1G066650.2	Barley	cytosol	47.94	49.25
TraesCS2D01G272300.3	Wheat	nucleus	49.64	48.35
KXG30181	Sorghum	nucleus	46.49	47.7
Os02t0469300-02	Rice	nucleus	46.0	47.32
VIT_13s0147g00080.t01	Wine grape	cytosol	19.85	40.69
KRH08132	Soybean	cytosol	28.93	37.94
Zm00001d053268_P001	Maize	cytosol	23.24	36.5
KRH69835	Soybean	cytosol	28.57	35.81
KRH63565	Soybean	cytosol	29.06	34.88
KRH03266	Soybean	mitochondrion	27.48	33.63
KRH76501	Soybean	cytosol	15.5	18.63

Protein Annotations

EMBL:ACUP02003341	EnsemblPlants:KRH59787	EnsemblPlantsGene:GLYMA_05G202900	EntrezGene:100786679	Gene3D:3.30.565.10	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:IPR036890	ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF7	PFAM:PF13589
ProteinID:KRH59787	ProteinID:KRH59787.1	SEG:seg	SUPFAM:SSF55874	UniParc:UPI00023C498B	UniProt:I1K6Q3
MapMan:12.5.1.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:38644497..38656329

Molecular Weight (calculated)

92727.3 Da

IEP (calculated)

7.511

GRAVY (calculated)

-0.716

Length

826 amino acids

Sequence
(BLAST)

001: MDVCVKEEVL ETPIVTERRP RTGVVSAPPP GSVIELSDSD TDEDEGHDLD SAVANAVNGA SSSVESPSKK RRTSEAGGVV LPVGFLTPLP PAPAPTPPPT
101: AVLSLPAPEW ASNSTASRAN ASKSLSLNSS KQFWKAGDYD GAPLGGSGSS TVGMDHVRVH PKFLHSNATS HKWALGALAE LLDNSLDEVC SGATYVNVDM
201: LTNKKDGTRM LLIEDNGGGM DPEKMRQCMS LGYSVKSKMA NTIGQYGNGF KTSTMRLGAD VIVFSRYPGK DMKSSSQSIG LLSYTFLRST GKEDIVVPML
301: DYERRGQEWN KIIRTSLDDW DKNVETIVQW SPFSNEADLL RQFNLVKDHG TRVIIYNLWE DDQGQLELDF DEDPHDIQIR GVNRDEKNIQ MAKEFPNSRH
401: FLTYRHSLRS YASILYLRLP PGFRIILRGK DILHHNIVND MMMSQEVTYR PQAGVDGLLP KDSNMVAVVT IGFVKDAVHH IDVSGFNVYH KNRLIKPFWR
501: IWNPAGSGGR GVIGVLEANF VEPAHDKQGF ERTLVLSRLE SKLIQMQKKY WSTNCYKIGY ASNRSKIQIR DSADKEASAD YFPESSQSKR KYSTTDGKAP
601: PLTSDKLHSY SNQKRIQKQT EKYRVYINGQ SSVSPKRKVQ SSSEQSSSDD EVSEVLPKKK TQKLSTAEKS FENENGCFQH TTSRGKTSQY TRGSKLEGKD
701: VNGGEQPLSD KDLLTLEQFK KENRELKERL QRKEEDILGE VLHALQHEKD RCKSLETQLI DAEKKLEELN NEQETLIDVF AEERDRRDAE EKKLRNKLEE
801: ASNTIKELLE KIRKLERKSS SGKLDR

Best Arabidopsis Sequence Match ( AT5G50780.2 )
(BLAST)

001: MEPIVKQENP VTTSTLSTWK PAARNKTIPP PESVIELSSS NEGSELGENL DEIAEIQSVD RTGGDDVSGT KRARSDSIAS PAKRLAVMIP DDDEEFLLST
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL SAVVTIGFVK DAKHHVDVQG FNVYHKNRLI KPFWRIWNAA
501: GSDGRGVIGV LEANFVEPAH DKQGFERTTV LSRLEARLLH MQKDYWRSKC HKIGYAKRQG RKSAKDTEKD TEDRESSPEF DPKGSASSRK RTVPSSFKTP
601: TAAPRFNTPT AASEKFNPRS NVNGGGKGSV KVSKDIGYKS SEKGGKLGNS FSKSNKRAKP QGARAVEVTN SDDDYDCDSS PERNVTELPG KSSELPKPQS
701: GPRTLSQLEQ ENNELRERLD KKEEVFLLLQ KDLRRERELR KTLEAEVETL KNKLKEMDKE QASLIDVFAE DRDRRDKEEE NLRIKLEEAS NTIQKLIDGK
801: ARGR

Arabidopsis Description

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:TAIR;Acc:AT5G50780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.