CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34330	Canola	nucleus	96.58	96.15
CDX92664	Canola	nucleus	85.44	83.09
CDY11045	Canola	nucleus	85.88	82.93
AT4G24970.1	Thale cress	nucleus	80.53	76.66
CDX71661	Canola	cytosol	14.71	60.0
CDX84876	Canola	nucleus	67.46	59.89
CDY45818	Canola	nucleus	67.46	58.58
VIT_17s0000g00910.t01	Wine grape	nucleus	67.31	54.58
KRH41106	Soybean	nucleus	65.38	53.66
KRH59787	Soybean	nucleus	65.82	53.63
Solyc03g097520.2.1	Tomato	nucleus	64.78	52.28
EES10563	Sorghum	nucleus	57.36	48.98
GSMUA_Achr11P...	Banana	nucleus	60.03	48.85
Zm00001d004118_P003	Maize	nucleus	57.36	48.37
TraesCS2B01G291200.1	Wheat	nucleus	56.31	48.04
Zm00001d053269_P001	Maize	cytosol	18.57	47.89
TraesCS2A01G273000.2	Wheat	nucleus	54.98	45.85
HORVU2Hr1G066650.2	Barley	cytosol	54.09	45.27
CDY52039	Canola	plastid	45.62	44.69
CDX84021	Canola	plastid	45.62	44.49
CDX81912	Canola	nucleus	16.34	43.82
TraesCS2D01G272300.3	Wheat	nucleus	55.13	43.75
KXG30181	Sorghum	nucleus	51.71	43.23
Os02t0469300-02	Rice	nucleus	50.52	42.34
CDX69668	Canola	nucleus, plastid	47.85	38.7
CDX97228	Canola	nucleus, plastid	47.7	38.67
VIT_13s0147g00080.t01	Wine grape	cytosol	22.29	37.22
CDY21683	Canola	nucleus	32.84	34.32
CDY59688	Canola	golgi, plasma membrane, plastid	8.92	33.9
CDY41018	Canola	nucleus	32.99	32.65
Zm00001d053268_P001	Maize	cytosol	25.41	32.51
CDX81913	Canola	nucleus	16.94	30.4
CDY59720	Canola	endoplasmic reticulum, extracellular	10.85	29.08
CDX75568	Canola	cytosol	33.58	16.78
CDX69218	Canola	cytosol	33.28	16.58

Protein Annotations

EnsemblPlants:CDY03400	EnsemblPlantsGene:GSBRNA2T00116039001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF7	PFAM:PF13589	ProteinID:CDY03400	ProteinID:CDY03400.1
SEG:seg	SUPFAM:SSF55874	UniParc:UPI0004EDEE99	MapMan:12.5.1.2	:	:

Description

BnaC01g16820D

Coordinates

chrLK031943:-:202639..206981

Molecular Weight (calculated)

76198.2 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.744

Length

673 amino acids

Sequence
(BLAST)

001: MDNDAKQEYL QTSTPPHPVE ETVTLIDLCS GGDDSDLVEQ DVQRRYNSGG AKRPRGSSAL DMNNAKKKPT ADELKFVLPE GFGPSITTEA SSGRVGSCKQ
101: FWKAGDYEGA PGGNWDLSSG GFDHVRVHPK FLHSNATSHK WALGAFAELL DNALDEVASG ATYVNVDMLE NKKEGNRMLL IEDNGGGMNP EKMRQCMSLG
201: YSAKSKLANT IGQYGNGFKT STMRLGADVI VFSRSPGKDG KSSTQSIGLL SYTFLRSTGK EDIVVPMLDY ERRDTEWSKI VRSSLSDWDK NVKTIIQWSP
301: FSSEEDLLRQ FALMNDHGTR IIIYNLWEDD QGMLELDFDA DPHDIQLRGV NRDEKNIKMA AQFPNSRHFL TYKHSLRSYA SILYLRIPPS FRIILRGSDV
401: EHHNVVNDMM QTEQITYRPQ YGADSYVKDS NMSAVVILGF VKDAKHHVDV QGFNVYHKNR LIKPFWRIWN ATGSDGRGVI GVLEANFVEP AHDKQGFERT
501: TVLSRLETRL IQMQKIYWST NCHKIGYAPR RHPKAGNDYG HTNTSPENDH EEYSPSGFKT RASDKFYSSS NPNNRGDNGV SGNDSSLYLQ EELRRERERS
601: KALEAEVEIA RQKIEEMSKE QENLIAIFTE ERDRRDVEEE SLRNKLEEAS NTIEELLNKI KMLEGSKGPS WRR

Best Arabidopsis Sequence Match ( AT4G24970.1 )
(BLAST)

001: MDNSIHVKRE IQLPSTSPAG FPGRESVTVV DLCSSDDDSD IGEVAGGLEK VGNNFVGLKR GRDTFGGSSE VDRNNVKKVT TLAELGVGLP EGFGQSNPPE
101: SLTHPIPANP CNVFRPVPPP PPPPYAGTSG KIGGCKQFWK AGDYEGAAGD NWDLSSGGFD HVRVHPKFLH SNATSHKWAL GAFAELLDNA LDEVASGATY
201: VKVDMLENNK GGNRMLLIED NGGGMDPEKM RQCMSLGYSA KSKLANTIGQ YGNGFKTSTM RLGADVIVFS RCPGKDGKSS TQSIGLLSYT FLRSTGKEDI
301: VVPMLDYERR DPEWSKIIRS STRDWDKNVE TIIQWSPFSS EEDLLHQFDL MKDRGTRIII YNLWEDDQGM LELDFDADPY DIQLRGVNRE ERNIKMASQF
401: PNSRHFLTYK HSLRSYVSIL YLRIPPGFRI ILRGIDVEHH SVVNDMMQTE QITYRPQSES YGVVTNMSAI VIIGFVKDAK HHVDVQGFNV YHKNRLIKPF
501: WRIWNATGSD GRGVIGVLEA NFVEPAHDKQ GFERTTVLAR LESRLVQMQK TYWSTNCHKI GYAPRRREKS AYGYDNRDSS PENDREGPSS IKTPTPASDK
601: FYSSSYPNHN GDNGVSGKDG ARLQEELRRE KERRKALEVE VQLSRQKIEE MKKEQENLIE IFSEERDRRD GEEEVLRNKL EEASNTIDDL LNKIKKMEGS
701: KVPSWRH

Arabidopsis Description

MORC7Protein MICRORCHIDIA 7 [Source:UniProtKB/Swiss-Prot;Acc:F4JRS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.