CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 2
mitochondrion 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009101	Potato	plastid	19.21	34.0
CDY59720	Canola	endoplasmic reticulum, extracellular	38.42	27.09
GSMUA_Achr4P18410_001	Banana	extracellular	25.99	25.27
AT4G36270.1	Thale cress	cytosol	52.54	19.14
AT4G36280.1	Thale cress	cytosol	60.45	17.09
GSMUA_Achr4P18400_001	Banana	cytosol	17.51	15.05
VIT_04s0023g02740.t01	Wine grape	cytosol	54.24	14.98
KRH08132	Soybean	cytosol	53.11	14.92
Solyc02g084700.2.1	Tomato	cytosol	53.11	14.6
KRH69835	Soybean	cytosol	52.54	14.11
TraesCS1B01G051700.2	Wheat	cytosol	45.76	13.48
Zm00001d024625_P002	Maize	cytosol	44.07	13.22
KXG24418	Sorghum	cytosol	44.63	13.19
TraesCS1A01G039200.1	Wheat	cytosol	40.68	13.14
TraesCS1D01G040800.1	Wheat	cytosol	44.07	12.96
HORVU7Hr1G083280.20	Barley	cytosol	44.07	12.87
Os10t0181700-01	Rice	cytosol, plastid	44.07	12.81
TraesCS7A01G338600.1	Wheat	cytosol, plastid	44.07	12.66
TraesCS7D01G345800.1	Wheat	cytosol	44.07	12.66
TraesCS7B01G249900.1	Wheat	cytosol	43.5	12.5
HORVU1Hr1G006770.6	Barley	cytosol	43.5	12.26
CDX81912	Canola	nucleus	16.38	11.55
CDX92664	Canola	nucleus	35.03	8.96
CDY03400	Canola	nucleus	33.9	8.92
CDY34330	Canola	nucleus	33.9	8.88
CDY11045	Canola	nucleus	33.9	8.61
CDY41018	Canola	nucleus	32.77	8.53
CDX75568	Canola	cytosol	61.02	8.02
CDX84876	Canola	nucleus	33.9	7.92
CDX69218	Canola	cytosol	59.89	7.85
CDY45818	Canola	nucleus	33.9	7.74
CDY21683	Canola	nucleus	27.68	7.61
CDY52039	Canola	plastid	29.38	7.57
CDX84021	Canola	plastid	29.38	7.54
CDX97228	Canola	nucleus, plastid	31.64	6.75
CDX69668	Canola	nucleus, plastid	31.64	6.73
CDX71661	Canola	cytosol	4.52	4.85
CDX81913	Canola	nucleus	10.17	4.8

Protein Annotations

EnsemblPlants:CDY59688	EnsemblPlantsGene:GSBRNA2T00027598001	PANTHER:PTHR23336	PANTHER:PTHR23336:SF18	ProteinID:CDY59688	ProteinID:CDY59688.1
UniParc:UPI0004EF3F5F	UniProt:A0A078J802	MapMan:12.5.1.2	:	:	:

Description

BnaC07g51080DBnaC07g51080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J802]

Coordinates

chrLK033796:-:3561..4698

Molecular Weight (calculated)

20413.9 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.307

Length

177 amino acids

Sequence
(BLAST)

001: MDPYGIRKCM SLGYSSKKSN TTIGQRKYFY ILLKETLRFF LVSLLCFYLL CSSKATQSVG LLPYTFLRKT GQEDVTVPMV KPSASMGGPQ PIVYESSEDW
101: STNLNILLKW SQFEDIGAHG SKVLNISLKG QDKRLRDESV QDEKRINSRT LELRSHISYR VRHSLRAYTS MLYLKMF

Best Arabidopsis Sequence Match ( AT4G36280.1 )
(BLAST)

001: MPPMAKNAAV TDVVHLDSDS DSDNGVVGGR ESASTIAGAA TMAPRETLEC RSFWKAGDYF VIPNVVTPTA PGMLEHARVH PRFLHSNATS HKWAFGAIAE
101: LLDNAVDEIQ NGATFVKIDK INIVKDNSPA LVFQDDGGGM DPAGLRKCMS LGYSSKKSNT TIGQYGNGFK TSTMRLGADA IVFSRSTRGG TSTQSVGILS
201: YTFLRKTGQD DVTVPMIDID ISKERPQPII YGSPEDWAAN LEILLKWSPF STEDELLQQF EDVGTHGTKV IIYNLWLNDE GIYELSFDDD EEDIRLRDES
301: VNDGKRLHHK ILELRSHISY HLRYSLRAYA SMLYLKKFKN FKIIIRGIPV EQFNIADGFR FPEIIKYKPH TATTEQASTE IKIGFVKEAP KLAICGFNVY
401: HKNRLIRPFW KVTMGGDSTG HGVVGVLEAN FIEPAHDKQD FERSSLFQRL EARLKKIVYS YWYSHCHLLG YHKYQMPADK SKKIAIPDQP PTISTVNPSP
501: LPSDKISQGG PIIREINLSN ATSSRTVAFA SPHLRNSTGL RSNFQPVQLN PQPTAADTGN NLDGKSAGEI RQENLQLFMR CEEYIKKENE TEQTVKSLEK
601: ELEEFKSKCA HLALLVDAKK KEMQQA

Arabidopsis Description

MORC2Protein MICRORCHIDIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5FV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.