Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G025740.13 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36290.1 | HORVU5Hr1G025740.13 | AT5G11980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G051700.2 | Wheat | cytosol | 90.45 | 94.51 |
| TraesCS1A01G039200.1 | Wheat | cytosol | 82.32 | 94.34 |
| TraesCS1D01G040800.1 | Wheat | cytosol | 89.81 | 93.69 |
| Os10t0181700-01 | Rice | cytosol, plastid | 79.46 | 81.94 |
| KXG24418 | Sorghum | cytosol | 76.75 | 80.47 |
| HORVU7Hr1G083280.20 | Barley | cytosol | 77.55 | 80.36 |
| Zm00001d024625_P002 | Maize | cytosol | 75.32 | 80.17 |
| GSMUA_Achr4P18400_001 | Banana | cytosol | 25.0 | 76.21 |
| GSMUA_Achr4P18410_001 | Banana | extracellular | 21.18 | 73.08 |
| VIT_04s0023g02740.t01 | Wine grape | cytosol | 51.59 | 50.55 |
| KRH08132 | Soybean | cytosol | 48.57 | 48.41 |
| PGSC0003DMT400009101 | Potato | plastid | 7.64 | 48.0 |
| AT4G36280.1 | Thale cress | cytosol | 47.61 | 47.76 |
| AT4G36290.1 | Thale cress | cytosol | 47.61 | 47.09 |
| Solyc02g084700.2.1 | Tomato | cytosol | 48.09 | 46.89 |
| AT4G36270.1 | Thale cress | cytosol | 35.83 | 46.3 |
| KRH69835 | Soybean | cytosol | 48.25 | 45.98 |
| CDY59688 | Canola | golgi, plasma membrane, plastid | 12.26 | 43.5 |
| HORVU3Hr1G046280.3 | Barley | cytosol | 38.53 | 37.29 |
| CDY59720 | Canola | endoplasmic reticulum, extracellular | 14.65 | 36.65 |
| HORVU2Hr1G066650.2 | Barley | cytosol | 39.33 | 30.72 |
| HORVU3Hr1G078330.4 | Barley | endoplasmic reticulum, plasma membrane | 37.26 | 29.32 |
| HORVU7Hr1G048310.12 | Barley | cytosol | 37.58 | 26.94 |
| Bra011676.1-P | Field mustard | cytosol | 47.93 | 23.55 |
| CDX75568 | Canola | cytosol | 47.61 | 22.2 |
| CDX69218 | Canola | cytosol | 47.29 | 21.98 |
| HORVU1Hr1G080470.5 | Barley | cytosol | 17.99 | 14.66 |
| HORVU7Hr1G093640.3 | Barley | cytosol | 6.69 | 12.03 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G006770.6 | EnsemblPlantsGene:HORVU1Hr1G006770 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR036890 |
| ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF46 | PFAM:PF13589 | SEG:seg | SUPFAM:SSF55874 |
| UniParc:UPI000B466DCF | UniProt:A0A287EJH2 | MapMan:12.5.1.2 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:13499695..13518079
Molecular Weight (calculated)
70399.8 Da
IEP (calculated)
6.184
GRAVY (calculated)
-0.386
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: PAAMAGGAAG GDGGGRSLDC RSFWKAGASE GRSAPVREFH DALETGDFDR ARVHPKFLHT NATSHKWAFG AISELLDNAV DEICNGATFI KVDKSTNVKD
101: NSPMLVFQDN GGGMDPEGVR HCMSLGFSTK KSKTTIGQYG NGFKTSTMRL GADAMVFTRA IRESNVTLSI GLLSYTYLRR TMKDDIVVPM LDFEVKDGQI
201: VPLVYGSQGD WDSSLKIILD WSPFSSKEEL LQQFEDMDSH GTKVVIYNLW MNDDGLLELD FDDDEEDILL RDQGQNSGAS TKIQKEIIQQ HISHRLRFSL
301: RAYSSILYLR KFENFQIILR GKPVEQINIA NELKFKKVVT YKPQVSHDSQ VVSVKVDIGF AKEAPVLGIF GINVYHKNRL IMPFWKVLQE ASSRGRSVIG
401: EFHILVLSLW LICFCLDDTC LDVGVLEANF IEPAHDKQDF ERTPLFIRLE AKLKQIIVDY WKEKCHLIGY QPIDPKLRSQ YKAALKDSGG PGAKIRHEAS
501: TSQKTGGHLS NLLPQTYDDV AALRLTANRA GSALHSSGQA QEDSMDSAGL EEDLVDIGSQ GVLDPNLNEK LSEENLVLFT RREGLRQRDT QLKQTIGELE
601: HELEETKRRC SELAAELQLR RSQQQRYM
101: NSPMLVFQDN GGGMDPEGVR HCMSLGFSTK KSKTTIGQYG NGFKTSTMRL GADAMVFTRA IRESNVTLSI GLLSYTYLRR TMKDDIVVPM LDFEVKDGQI
201: VPLVYGSQGD WDSSLKIILD WSPFSSKEEL LQQFEDMDSH GTKVVIYNLW MNDDGLLELD FDDDEEDILL RDQGQNSGAS TKIQKEIIQQ HISHRLRFSL
301: RAYSSILYLR KFENFQIILR GKPVEQINIA NELKFKKVVT YKPQVSHDSQ VVSVKVDIGF AKEAPVLGIF GINVYHKNRL IMPFWKVLQE ASSRGRSVIG
401: EFHILVLSLW LICFCLDDTC LDVGVLEANF IEPAHDKQDF ERTPLFIRLE AKLKQIIVDY WKEKCHLIGY QPIDPKLRSQ YKAALKDSGG PGAKIRHEAS
501: TSQKTGGHLS NLLPQTYDDV AALRLTANRA GSALHSSGQA QEDSMDSAGL EEDLVDIGSQ GVLDPNLNEK LSEENLVLFT RREGLRQRDT QLKQTIGELE
601: HELEETKRRC SELAAELQLR RSQQQRYM
001: MAKNYTVADV VNIDSDSDSD DDNGGVIGMV PSLASLIENQ KVSIADAATV APRETLECRS FWKAGENFVI PSSVTLTAIG MVEHARVHPK FLHSNATSHK
101: WAFGAIAELL DNAVDEIQNG ATVVKIDKIN IVKDNTPALV FQDNGGGMDP NGIRKCMSLG YSSKKSNTTI GQYGNGFKTS TMRLGADAMV FSRSTRGGKS
201: TQSIGLLSYT FLRKTGQDDV IVPMIDFDIS SDSPQPIIYG SPGDWSTNLN ILLKWSPFST MVELLQQFED IGTHGTKVII YNLWLNDEGI YELSFDDDDV
301: DIRLRDENAQ DGKRLHAKTL EVRSHISYRY RHSLRAYISM LYLKKFKNFK IILRGVSVAQ FNIADEFRHP ETIMYKPQAA AVDYAATGIK VGFIKEAPKL
401: PICGFNVYHK NRLIRPFWKV VLEGSTRGNG VMGVLEANFI EPAHDKQDFE RSSLFLRLEA RLKRITSDYW QNHCHIFGYQ TAQIPADKSK RTVIPDQPPT
501: VNTYNPSPLP SDRISHGGPI IREINLSNAT SSRTAAVAAP HLRNYTGLRN NFQPVQLNPQ PPAAGDTGNN LVGKLAAEIR EENLQLFMRC EEYVKKENEV
601: EQTVKSLEKE LEEIKSKCAQ LALLVDAKKK EMQQV
101: WAFGAIAELL DNAVDEIQNG ATVVKIDKIN IVKDNTPALV FQDNGGGMDP NGIRKCMSLG YSSKKSNTTI GQYGNGFKTS TMRLGADAMV FSRSTRGGKS
201: TQSIGLLSYT FLRKTGQDDV IVPMIDFDIS SDSPQPIIYG SPGDWSTNLN ILLKWSPFST MVELLQQFED IGTHGTKVII YNLWLNDEGI YELSFDDDDV
301: DIRLRDENAQ DGKRLHAKTL EVRSHISYRY RHSLRAYISM LYLKKFKNFK IILRGVSVAQ FNIADEFRHP ETIMYKPQAA AVDYAATGIK VGFIKEAPKL
401: PICGFNVYHK NRLIRPFWKV VLEGSTRGNG VMGVLEANFI EPAHDKQDFE RSSLFLRLEA RLKRITSDYW QNHCHIFGYQ TAQIPADKSK RTVIPDQPPT
501: VNTYNPSPLP SDRISHGGPI IREINLSNAT SSRTAAVAAP HLRNYTGLRN NFQPVQLNPQ PPAAGDTGNN LVGKLAAEIR EENLQLFMRC EEYVKKENEV
601: EQTVKSLEKE LEEIKSKCAQ LALLVDAKKK EMQQV
Arabidopsis Description
MORC1Protein MICRORCHIDIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.