Factsheet for TraesCS1A01G039200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36290.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT4G36290.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G040800.1	Wheat	cytosol	98.18	89.37
TraesCS1B01G051700.2	Wheat	cytosol	96.9	88.35
HORVU1Hr1G006770.6	Barley	cytosol	94.34	82.32
GSMUA_Achr4P18410_001	Banana	extracellular	24.64	74.18
Os10t0181700-01	Rice	cytosol, plastid	81.75	73.56
Zm00001d024625_P002	Maize	cytosol	79.01	73.39
KXG24418	Sorghum	cytosol	79.74	72.95
TraesCS7A01G338600.1	Wheat	cytosol, plastid	81.39	72.4
GSMUA_Achr4P18400_001	Banana	cytosol	22.08	58.74
VIT_04s0023g02740.t01	Wine grape	cytosol	53.65	45.87
KRH08132	Soybean	cytosol	50.91	44.29
PGSC0003DMT400009101	Potato	plastid	8.03	44.0
AT4G36280.1	Thale cress	cytosol	49.63	43.45
AT4G36290.1	Thale cress	cytosol	49.82	42.99
Solyc02g084700.2.1	Tomato	cytosol	49.82	42.39
KRH69835	Soybean	cytosol	50.55	42.03
AT4G36270.1	Thale cress	cytosol	36.86	41.56
CDY59688	Canola	golgi, plasma membrane, plastid	13.14	40.68
TraesCS3A01G192600.2	Wheat	cytosol	39.42	33.28
CDY59720	Canola	endoplasmic reticulum, extracellular	14.42	31.47
TraesCS3A01G329400.1	Wheat	plastid	39.6	30.27
TraesCS2A01G273000.2	Wheat	nucleus	41.06	27.88
TraesCS7A01G235300.2	Wheat	nucleus	39.96	21.83
Bra011676.1-P	Field mustard	cytosol	50.37	21.6
CDX75568	Canola	cytosol	50.18	20.42
CDX69218	Canola	cytosol	49.82	20.21
TraesCS7A01G399000.1	Wheat	cytosol	19.71	14.23

Protein Annotations

EnsemblPlants:TraesCS1A01G039200.1	EnsemblPlantsGene:TraesCS1A01G039200	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF46	PFAM:PF13589	SEG:seg	SUPFAM:SSF55874
TIGR:cd00075	MapMan:12.5.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:21322329..21334029

Molecular Weight (calculated)

61380.8 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.440

Length

548 amino acids

Sequence
(BLAST)

001: MPAVMAGVDG GGRSLDCRSF WKAGASEGPS VPIREFHDAL ETGDFDRARV HPKFLHTNAT SHKWAFGAIS ELLDNAVDEI CNGATFIKVD KSTNTKDNSP
101: MLVFQDDGGG MDPEGVRQCM SLGFSTKKSK TTIGQYGNGF KTSTMRLGAD AIVFTRAIRE SKVTLSIGLL SYTFLRRTMK DDIVVPMLDF EVQDGQIAPL
201: VYGSQGDWDS SLKIILDWSP FSSKEELLQQ FEDMDSHGTK VVIYNLWMND DGLLELDFDD DDEDILLRDQ GQNSGASTKI QKEIIQQHIS HRLRFSLRVS
301: VKVDIGFAKE APVLGIFGIN VYHKNRLIMP FWKVLQEASS RGRSVIGVLE ANFIEPAHDK QDFERTPLFI RLETKLKQII VDYWKEKCHL IGYQPIDPKL
401: RSQYKAALKD SGGPSVKIRH EASTAQKTGG HLSNLLPQTY DDEAAFRLTA NRAGSALHSS GQGSMDSAGL EEDLVDIGSL GVLDPSCNEK LSEENLVLFT
501: RREDLRQRDT QLKQTIGELE HELEETRRKC SQLAAELQLR RSQQQHYM

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.