Factsheet for Zm00001d024625_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d028871_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36290.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT4G36290.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT4G36290.1	Zm00001d053677_P001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24418	Sorghum	cytosol	95.08	93.66
Os10t0181700-01	Rice	cytosol, plastid	82.37	79.8
TraesCS1A01G039200.1	Wheat	cytosol	73.39	79.01
TraesCS1B01G051700.2	Wheat	cytosol	80.34	78.87
TraesCS1D01G040800.1	Wheat	cytosol	80.17	78.57
HORVU7Hr1G083280.20	Barley	cytosol	78.81	76.73
TraesCS7D01G345800.1	Wheat	cytosol	78.98	75.65
TraesCS7B01G249900.1	Wheat	cytosol	78.98	75.65
TraesCS7A01G338600.1	Wheat	cytosol, plastid	78.64	75.32
HORVU1Hr1G006770.6	Barley	cytosol	80.17	75.32
GSMUA_Achr4P18410_001	Banana	extracellular	23.22	75.27
GSMUA_Achr4P18400_001	Banana	cytosol	25.93	74.27
PGSC0003DMT400009101	Potato	plastid	8.81	52.0
VIT_04s0023g02740.t01	Wine grape	cytosol	54.41	50.08
AT4G36280.1	Thale cress	cytosol	50.85	47.92
KRH08132	Soybean	cytosol	50.68	47.46
Solyc02g084700.2.1	Tomato	cytosol	51.69	47.36
AT4G36290.1	Thale cress	cytosol	50.34	46.77
AT4G36270.1	Thale cress	cytosol	37.97	46.09
KRH69835	Soybean	cytosol	50.0	44.76
CDY59688	Canola	golgi, plasma membrane, plastid	13.22	44.07
CDY59720	Canola	endoplasmic reticulum, extracellular	15.25	35.86
Zm00001d044506_P006	Maize	cytosol	41.02	34.52
Zm00001d043191_P005	Maize	cytosol	38.98	31.17
Zm00001d012575_P001	Maize	mitochondrion, nucleus	38.98	30.67
Zm00001d004118_P003	Maize	nucleus	41.36	30.58
Zm00001d053269_P001	Maize	cytosol	13.39	30.27
Bra011676.1-P	Field mustard	cytosol	51.36	23.71
Zm00001d045978_P002	Maize	cytosol	37.97	22.93
CDX75568	Canola	cytosol	51.19	22.42
CDX69218	Canola	cytosol	51.02	22.28
Zm00001d053268_P001	Maize	cytosol	18.31	20.53
Zm00001d046722_P007	Maize	cytosol	18.64	13.13

Protein Annotations

EnsemblPlants:Zm00001d024625_P002	EnsemblPlants:Zm00001d024625_T002	EnsemblPlantsGene:Zm00001d024625	EntrezGene:100217197	Gene3D:3.30.565.10	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:IPR036890	ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF46	PFAM:PF13589
ProteinID:AQK41641.1	SEG:seg	SUPFAM:SSF55874	UniParc:UPI000221B061	UniProt:K7TR27	MapMan:12.5.1.2

Description

Protein MICRORCHIDIA 1

Coordinates

chr10:+:80856442..80879275

Molecular Weight (calculated)

66390.9 Da

IEP (calculated)

6.142

GRAVY (calculated)

-0.406

Length

590 amino acids

Sequence
(BLAST)

001: MDGSGRALDC RSFWKAGAYE APTAPTREFQ DALETGDFDR ARVHPKFLHT NATSHKWAFG AIAELLDNAV DEISNGATFI KVDKSINLKD NSSMLVFQDD
101: GGGMDPEGVR RCMSLGFSTK KSKTTIGQYG NGFKTSTMRL GADAIVFTRA IRGGNVTLSI GLLSYTFLRK TLKDDIVVPM LDFKIQDGDI VPLVYGSQGD
201: WDSSLKIVLD WSPFSSKEEL LQQFQDVGSH GTKVVVYNLW MNDDGLLELD FEDDDEDILL RDQGSASGGF SKSQKEIVKQ HISHRLRFSL RAYTSILYLR
301: KFDNFQIILR GKPVEQIFIT DELKFKKVVT YRPQAAHDSQ VASVKIDIGF AKEAPILGIF GMNVYHKDRL IMPFWKVLQE GSSRGRSVVG VLEANFIEPA
401: HDKQDFERTP LFIRLETRLR QIIIDFWKER CHLIGYQPMD PHLRSQYKAT LKESVGPAPV HHKASSVRRT GGLSSNLLPE TYDDITTVGL ANNGSHLQSS
501: DQAQENNMDS EVLDEDLVEI GSSGVLDPSF IEKLSEENIA LFSRREELRQ RDTQLKQTIG DLELELEETK KKCGQLAAQL KAWKNQQHLP

Best Arabidopsis Sequence Match ( AT4G36290.1 )
(BLAST)

001: MAKNYTVADV VNIDSDSDSD DDNGGVIGMV PSLASLIENQ KVSIADAATV APRETLECRS FWKAGENFVI PSSVTLTAIG MVEHARVHPK FLHSNATSHK
101: WAFGAIAELL DNAVDEIQNG ATVVKIDKIN IVKDNTPALV FQDNGGGMDP NGIRKCMSLG YSSKKSNTTI GQYGNGFKTS TMRLGADAMV FSRSTRGGKS
201: TQSIGLLSYT FLRKTGQDDV IVPMIDFDIS SDSPQPIIYG SPGDWSTNLN ILLKWSPFST MVELLQQFED IGTHGTKVII YNLWLNDEGI YELSFDDDDV
301: DIRLRDENAQ DGKRLHAKTL EVRSHISYRY RHSLRAYISM LYLKKFKNFK IILRGVSVAQ FNIADEFRHP ETIMYKPQAA AVDYAATGIK VGFIKEAPKL
401: PICGFNVYHK NRLIRPFWKV VLEGSTRGNG VMGVLEANFI EPAHDKQDFE RSSLFLRLEA RLKRITSDYW QNHCHIFGYQ TAQIPADKSK RTVIPDQPPT
501: VNTYNPSPLP SDRISHGGPI IREINLSNAT SSRTAAVAAP HLRNYTGLRN NFQPVQLNPQ PPAAGDTGNN LVGKLAAEIR EENLQLFMRC EEYVKKENEV
601: EQTVKSLEKE LEEIKSKCAQ LALLVDAKKK EMQQV

Arabidopsis Description

MORC1Protein MICRORCHIDIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.