Factsheet for VIT_04s0023g02740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g01350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36290.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18410_001	Banana	extracellular	19.19	67.58
GSMUA_Achr4P18400_001	Banana	cytosol	21.06	65.53
Solyc02g084700.2.1	Tomato	cytosol	62.71	62.42
KRH08132	Soybean	cytosol	61.15	62.22
KRH69835	Soybean	cytosol	59.59	57.97
PGSC0003DMT400009101	Potato	plastid	8.74	56.0
TraesCS1B01G051700.2	Wheat	cytosol	51.33	54.74
AT4G36280.1	Thale cress	cytosol	53.35	54.63
TraesCS1D01G040800.1	Wheat	cytosol	51.17	54.49
Zm00001d024625_P002	Maize	cytosol	50.08	54.41
CDY59688	Canola	golgi, plasma membrane, plastid	14.98	54.24
AT4G36290.1	Thale cress	cytosol	53.2	53.7
TraesCS1A01G039200.1	Wheat	cytosol	45.87	53.65
KXG24418	Sorghum	cytosol	49.77	53.26
Os10t0181700-01	Rice	cytosol, plastid	50.55	53.2
HORVU7Hr1G083280.20	Barley	cytosol	49.92	52.81
TraesCS7B01G249900.1	Wheat	cytosol	49.92	51.95
TraesCS7A01G338600.1	Wheat	cytosol, plastid	49.77	51.79
AT4G36270.1	Thale cress	cytosol	39.16	51.65
TraesCS7D01G345800.1	Wheat	cytosol	49.61	51.62
HORVU1Hr1G006770.6	Barley	cytosol	50.55	51.59
VIT_14s0066g00870.t01	Wine grape	nucleus	42.59	43.33
CDY59720	Canola	endoplasmic reticulum, extracellular	16.07	41.04
VIT_17s0000g08750.t01	Wine grape	nucleus	43.06	38.93
VIT_17s0000g00910.t01	Wine grape	nucleus	40.09	30.96
Bra011676.1-P	Field mustard	cytosol	55.07	27.62
CDX75568	Canola	cytosol	55.07	26.21
CDX69218	Canola	cytosol	54.76	25.98
VIT_13s0147g00080.t01	Wine grape	cytosol	13.1	20.84
VIT_04s0044g01710.t01	Wine grape	plastid	16.38	17.77

Protein Annotations

EntrezGene:100262696	wikigene:100262696	MapMan:12.5.1.2	Gene3D:3.30.565.10	ProteinID:CBI17427	ProteinID:CBI17427.3
ncoils:Coil	UniProt:D7SP48	EMBL:FN594959	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
EntrezGene:LOC100262696	wikigene:LOC100262696	PFAM:PF13589	PANTHER:PTHR23336	PANTHER:PTHR23336:SF18	SUPFAM:SSF55874
UniParc:UPI0001BE0D0C	ArrayExpress:VIT_04s0023g02740	EnsemblPlantsGene:VIT_04s0023g02740	EnsemblPlants:VIT_04s0023g02740.t01	RefSeq:XP_002267687	RefSeq:XP_002267687.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:19272763..19321895

Molecular Weight (calculated)

72300.0 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.536

Length

641 amino acids

Sequence
(BLAST)

001: MDVVEIASSD DEGGVGVERR SNQQVQTDQV GQQTVVPLPP AEPPLSRSFW KAGAYDNTPS KLTPAPDQLE HARVHPKFLH SNATSHKWAF GAIAELLDNA
101: VDEICNGATF VKLDRIDNRK DNSPALLFQD DGGGMDPESI RKCMSLGYSS KKSNTTIGQY GNGFKTSTMR LGADVIVFSR ASRTSRATQS IGLLSYTFLR
201: RTGQDDVIVP MVDFDISDHW AEPIIYSSKE DWSTNLKTIL EWSPFASKEE LMQQFEDIGP HGTKIIIYNL WLNDEGIFEL NFDDDDEDIR LRDEANRGSL
301: SKVPKKVAEL QSHISYCIRY SLRAYASILY LRKFTNFQII LRGKPVQQFN IADELKYPKV VIYRPQHNTA LKEASMETTI GFIKEAPALG VSGFNVYHKN
401: RLIRPFWKVT SDGSSKGNGV VGVLEANFIE PAHDKQDFER SSLFIRLETK LKQMLMDYWK SNCHLMGHQP PGSRVQNMQK KHPAQSPVGH AAHIQKQLPA
501: NQHIVGLTAN TKKEMNLDQP INCLTANLGQ DVDNVQPGNR CRTSVREELP AVQPIIGLRE GSFKEVTSAD GSGLISVDKI CEENIQLFMR CEEHMRKENE
601: LKQTISELER KLEEAKKKCA QLSSHLEIRR KQRILKSTEK I

Best Arabidopsis Sequence Match ( AT4G36280.1 )
(BLAST)

001: MPPMAKNAAV TDVVHLDSDS DSDNGVVGGR ESASTIAGAA TMAPRETLEC RSFWKAGDYF VIPNVVTPTA PGMLEHARVH PRFLHSNATS HKWAFGAIAE
101: LLDNAVDEIQ NGATFVKIDK INIVKDNSPA LVFQDDGGGM DPAGLRKCMS LGYSSKKSNT TIGQYGNGFK TSTMRLGADA IVFSRSTRGG TSTQSVGILS
201: YTFLRKTGQD DVTVPMIDID ISKERPQPII YGSPEDWAAN LEILLKWSPF STEDELLQQF EDVGTHGTKV IIYNLWLNDE GIYELSFDDD EEDIRLRDES
301: VNDGKRLHHK ILELRSHISY HLRYSLRAYA SMLYLKKFKN FKIIIRGIPV EQFNIADGFR FPEIIKYKPH TATTEQASTE IKIGFVKEAP KLAICGFNVY
401: HKNRLIRPFW KVTMGGDSTG HGVVGVLEAN FIEPAHDKQD FERSSLFQRL EARLKKIVYS YWYSHCHLLG YHKYQMPADK SKKIAIPDQP PTISTVNPSP
501: LPSDKISQGG PIIREINLSN ATSSRTVAFA SPHLRNSTGL RSNFQPVQLN PQPTAADTGN NLDGKSAGEI RQENLQLFMR CEEYIKKENE TEQTVKSLEK
601: ELEEFKSKCA HLALLVDAKK KEMQQA

Arabidopsis Description

MORC2Protein MICRORCHIDIA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5FV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.