Factsheet for VIT_17s0000g08750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81912	Canola	nucleus	24.26	68.53
KRH63565	Soybean	cytosol	62.2	64.1
AT1G19100.1	Thale cress	nucleus	56.84	60.78
Solyc06g071580.2.1	Tomato	cytosol	50.92	60.07
VIT_14s0066g00870.t01	Wine grape	nucleus	53.31	60.0
Bra031063.1-P	Field mustard	nucleus	54.3	57.81
CDY21683	Canola	nucleus	52.19	57.45
Solyc01g099300.2.1	Tomato	nucleus	57.69	57.36
CDY41018	Canola	nucleus	53.74	56.03
GSMUA_Achr9P25210_001	Banana	cytosol	40.76	55.26
KRH03266	Soybean	mitochondrion	51.2	53.78
CDX81913	Canola	nucleus	27.36	51.73
GSMUA_Achr4P13250_001	Banana	cytosol	41.89	47.98
Os01t0549200-02	Rice	cytosol, peroxisome, plastid	24.12	47.11
TraesCS3D01G202400.1	Wheat	cytosol	42.6	46.53
HORVU3Hr1G046280.3	Barley	cytosol	42.45	46.38
TraesCS3A01G192600.2	Wheat	cytosol	42.45	46.38
TraesCS3B01G231900.1	Wheat	cytosol	42.17	46.07
Os11t0454800-01	Rice	cytosol	28.77	45.03
EES00907	Sorghum	cytosol	42.88	44.97
Zm00001d044506_P006	Maize	cytosol	42.74	43.22
VIT_04s0023g02740.t01	Wine grape	cytosol	38.93	43.06
TraesCS3B01G359600.1	Wheat	cytosol	39.63	39.91
Zm00001d043191_P005	Maize	cytosol	40.76	39.16
TraesCS3A01G329400.1	Wheat	plastid	39.49	39.05
TraesCS3D01G322900.1	Wheat	plastid	39.49	38.94
KXG33558	Sorghum	cytosol	40.48	38.94
EER87847	Sorghum	plastid	39.92	38.45
Zm00001d012575_P001	Maize	mitochondrion, nucleus	39.92	37.73
HORVU3Hr1G078330.4	Barley	endoplasmic reticulum, plasma membrane	39.77	35.34
HORVU7Hr1G048310.12	Barley	cytosol	41.61	33.68
VIT_17s0000g00910.t01	Wine grape	nucleus	36.67	31.33
TraesCS7A01G235300.2	Wheat	nucleus	42.31	29.91
OQU76414	Sorghum	cytosol	39.21	29.32
TraesCS7D01G235400.1	Wheat	cytosol	41.61	28.04
Zm00001d045978_P002	Maize	cytosol	37.8	27.43
TraesCS7B01G133500.2	Wheat	cytosol	41.33	26.73
VIT_13s0147g00080.t01	Wine grape	cytosol	12.13	21.34
VIT_04s0044g01710.t01	Wine grape	plastid	15.51	18.61

Protein Annotations

EntrezGene:100263884	wikigene:100263884	MapMan:12.5.1.2	Gene3D:3.30.565.10	EMBL:AM484425	ProteinID:CAN66421
ProteinID:CAN66421.1	ProteinID:CBI15000	ProteinID:CBI15000.3	ncoils:Coil	UniProt:D7SHP0	EMBL:FN594950
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009536	GO:GO:0009605
GO:GO:0009607	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0031935	GO:GO:0040029	GO:GO:0042803	GO:GO:0080188	GO:GO:1902290	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:IPR036890	EntrezGene:LOC100263884	wikigene:LOC100263884	PFAM:PF13589	PANTHER:PTHR23336
PANTHER:PTHR23336:SF44	SUPFAM:SSF55874	UniParc:UPI0001985262	ArrayExpress:VIT_17s0000g08750	EnsemblPlantsGene:VIT_17s0000g08750	EnsemblPlants:VIT_17s0000g08750.t01
unigene:Vvi.22936	RefSeq:XP_002278685	RefSeq:XP_002278685.1	RefSeq:XP_010663141.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:10124363..10159485

Molecular Weight (calculated)

80015.8 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.518

Length

709 amino acids

Sequence
(BLAST)

001: MSFPDIVDLC SDDEHVEVDV KPVKLEPNII EREIQLFKCH EILQAQYQLS KTHCRTQESE ENRDSNALST AQSSTSILDQ GQSPMDDTSL SSTSPICPAP
101: LCRQFWKAGN YDDELGSKVT LQNGKNYLHV HPMFLHSNAT SHKWAFGAIA ELLDNAVDEI QNGATFVIVD KTSNPRDGSP ALLIQDDGGG MGPEAMRCCM
201: SFGFSDKKSK SAIGQYGNGF KTSSMRLGAD VIVFSRHLDN GKLTQSAGLL SYSFLRQTGH DRIVVPMVDY EFNTSTSNME PLHRYGKKHF TSNLSILLRW
301: SPYSTEQELL KQFDDIGYHG TKVVIYNLWF SDDGNVELDF DSDPEDIRIG GDIKQVTTIP AWKTINEQHI ANRFHISLRV YLSILYLRIP QNFNIILRGK
401: VVEHHNIAND LKFPEFILYR PQTGGLVEGT VVTTIGFLKE APQVNIHGFN VYHKNRLILP FWQVVNYSDS RGRGVVGVLE ANFIEPIHNK QDFERTSLFQ
501: KLEGRLKEMT WEYWDYHCGL IGYQVKKKPR TLVSPHISSH GSPHIAMEKP IGLNQSSPAI GNIKATPPGG AFQHPAATAS HCLAGRPGEP ITDSQSRSQQ
601: GASLKRTEHD HPVEPEKKKH AGIKEIVTDT HSQETQPVDI FANHSKDQEA MTLMQENKKL HAQCLEYEKR EKELSVKMIQ LRNELREVHN EQARLLAELQ
701: HLDAIKDEK

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.