CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81912	Canola	nucleus	33.53	90.84
CDY21683	Canola	nucleus	82.06	86.65
CDX81913	Canola	nucleus	46.76	84.8
AT1G19100.1	Thale cress	nucleus	80.0	82.05
VIT_17s0000g08750.t01	Wine grape	nucleus	56.03	53.74
KRH63565	Soybean	cytosol	52.21	51.6
Solyc06g071580.2.1	Tomato	cytosol	45.29	51.25
GSMUA_Achr9P25210_001	Banana	cytosol	37.65	48.95
Solyc01g099300.2.1	Tomato	nucleus	49.12	46.84
KRH03266	Soybean	mitochondrion	45.88	46.22
GSMUA_Achr4P13250_001	Banana	cytosol	39.41	43.3
TraesCS3D01G202400.1	Wheat	cytosol	41.03	42.99
HORVU3Hr1G046280.3	Barley	cytosol	41.03	42.99
Os01t0549200-02	Rice	cytosol, peroxisome, plastid	22.94	42.98
TraesCS3B01G231900.1	Wheat	cytosol	40.88	42.84
TraesCS3A01G192600.2	Wheat	cytosol	40.88	42.84
Os11t0454800-01	Rice	cytosol	27.06	40.62
EES00907	Sorghum	cytosol	40.15	40.38
Zm00001d044506_P006	Maize	cytosol	40.44	39.23
TraesCS3B01G359600.1	Wheat	cytosol	38.82	37.5
TraesCS3A01G329400.1	Wheat	plastid	39.26	37.24
TraesCS3D01G322900.1	Wheat	plastid	39.26	37.13
KXG33558	Sorghum	cytosol	39.56	36.5
Zm00001d043191_P005	Maize	cytosol	39.56	36.45
EER87847	Sorghum	plastid	39.12	36.14
Zm00001d012575_P001	Maize	mitochondrion, nucleus	38.97	35.33
HORVU3Hr1G078330.4	Barley	endoplasmic reticulum, plasma membrane	39.56	33.71
CDY34330	Canola	nucleus	33.09	33.28
CDY11045	Canola	nucleus	33.97	33.14
CDY03400	Canola	nucleus	32.65	32.99
CDX92664	Canola	nucleus	33.53	32.95
CDY59688	Canola	golgi, plasma membrane, plastid	8.53	32.77
CDY52039	Canola	plastid	32.35	32.02
CDX84021	Canola	plastid	31.91	31.45
CDY59720	Canola	endoplasmic reticulum, extracellular	11.47	31.08
CDX84876	Canola	nucleus	34.26	30.74
HORVU7Hr1G048310.12	Barley	cytosol	38.68	30.02
CDY45818	Canola	nucleus	34.12	29.94
CDX71661	Canola	cytosol	6.91	28.48
CDX69668	Canola	nucleus, plastid	32.5	26.56
CDX97228	Canola	nucleus, plastid	32.35	26.51
OQU76414	Sorghum	cytosol	36.91	26.48
TraesCS7A01G235300.2	Wheat	nucleus	38.82	26.32
Zm00001d045978_P002	Maize	cytosol	36.18	25.18
TraesCS7D01G235400.1	Wheat	cytosol	37.94	24.52
TraesCS7B01G133500.2	Wheat	cytosol	37.79	23.45
CDX69218	Canola	cytosol	37.79	19.02
CDX75568	Canola	cytosol	37.35	18.86

Protein Annotations

EnsemblPlants:CDY41018	EnsemblPlantsGene:GSBRNA2T00072312001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF44	PFAM:PF13589	ProteinID:CDY41018	ProteinID:CDY41018.1
SEG:seg	SUPFAM:SSF55874	UniParc:UPI0004EEFD22	UniProt:A0A078HW85	MapMan:12.5.1.2	:

Description

BnaC05g14760DBnaC05g14760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW85]

Coordinates

chrLK032488:+:46525..52296

Molecular Weight (calculated)

76097.4 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.456

Length

680 amino acids

Sequence
(BLAST)

001: MSNNTSINVS HDALVVKPEH PYGSKGNHAL PQDSEENRGS LGAQSSTSVV DQVRTPPDDS GVTSSASTIC PAPVCRQFWK AGSYNDELSS KSQQPTGKNY
101: LHVHPMFLHS NATSHKWAFG AVAELLDNAV DEIQNGATFV IVDKTTNPRD GTPALLVQDD GGGMDPQAMR QCMGFGFSDK KSDSAIGRYG NGFKTSTMRL
201: GADAIVFSRH FKNQTWTQSI GLLSYTYLTR TGHDRIVVPI LDFEYKASTS EFVTLQDRER YISSLSILLE WSPFSTEAEL LQQASLLLKS FPTHAFDDIG
301: SHGTKVIIYN LWLNSDAKLE LDFDSAVEDI LIEGNIKKTG CKITNYHIAT RFSYSLRVYL SILYLRIPEA FKIVLRGKVV QQHNVADDLK HPQYILYKPH
401: VAGHEEGEVV TTIGFLKEAP KINLNGFCVY HKNRLIMPFW QVVSNSNSRG RGIVGALEAN FVEPTHNKQD FEKTVLLQKL ENRLKEMTME YWNCHYVLIG
501: YQDVNKPRPK VPQNVQPGGR PNANMLRKNS AGYSGRQTMS PPPGFPAVFN NTNLASLPRV SAEPVVLEKR KEHPDLVASA ASRRKVGSDG FTVPGHIRVE
601: QFIQGSANQS QDSEIVKLME KNKKLRAKWL DHKVRSQTLE VKAMNLSSEL EKVKSEYERL MEELQALSVV KEERSRHVNT

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.