CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21683	Canola	nucleus	94.02	36.65
CDY41018	Canola	nucleus	90.84	33.53
AT1G19100.1	Thale cress	nucleus	86.85	32.88
Os01t0549200-02	Rice	cytosol, peroxisome, plastid	44.62	30.85
Os11t0454800-01	Rice	cytosol	45.42	25.17
GSMUA_Achr9P25210_001	Banana	cytosol	51.0	24.47
VIT_17s0000g08750.t01	Wine grape	nucleus	68.53	24.26
Solyc06g071580.2.1	Tomato	cytosol	56.57	23.63
KRH63565	Soybean	cytosol	63.35	23.11
Solyc01g099300.2.1	Tomato	nucleus	58.57	20.62
GSMUA_Achr4P13250_001	Banana	cytosol	50.6	20.52
KRH03266	Soybean	mitochondrion	54.18	20.15
TraesCS3D01G202400.1	Wheat	cytosol	48.61	18.8
TraesCS3B01G231900.1	Wheat	cytosol	48.61	18.8
TraesCS3A01G192600.2	Wheat	cytosol	48.61	18.8
HORVU3Hr1G046280.3	Barley	cytosol	48.61	18.8
EES00907	Sorghum	cytosol	47.41	17.6
Zm00001d044506_P006	Maize	cytosol	47.01	16.83
CDY34330	Canola	nucleus	44.62	16.57
TraesCS3B01G359600.1	Wheat	cytosol	46.22	16.48
CDY59688	Canola	golgi, plasma membrane, plastid	11.55	16.38
CDY03400	Canola	nucleus	43.82	16.34
CDX92664	Canola	nucleus	45.02	16.33
CDY11045	Canola	nucleus	45.02	16.21
TraesCS3A01G329400.1	Wheat	plastid	46.22	16.18
TraesCS3D01G322900.1	Wheat	plastid	46.22	16.13
Zm00001d043191_P005	Maize	cytosol	47.41	16.12
EER87847	Sorghum	plastid	45.82	15.62
KXG33558	Sorghum	cytosol	45.82	15.6
Zm00001d012575_P001	Maize	mitochondrion, nucleus	44.22	14.8
CDX84876	Canola	nucleus	44.22	14.64
CDX84021	Canola	plastid	40.24	14.64
CDY52039	Canola	plastid	39.84	14.56
HORVU3Hr1G078330.4	Barley	endoplasmic reticulum, plasma membrane	45.82	14.41
CDY45818	Canola	nucleus	43.82	14.19
HORVU7Hr1G048310.12	Barley	cytosol	46.22	13.24
CDX69668	Canola	nucleus, plastid	39.84	12.02
CDX97228	Canola	nucleus, plastid	39.44	11.93
TraesCS7A01G235300.2	Wheat	nucleus	47.01	11.76
OQU76414	Sorghum	cytosol	43.43	11.5
TraesCS7D01G235400.1	Wheat	cytosol	47.01	11.22
Zm00001d045978_P002	Maize	cytosol	42.23	10.85
TraesCS7B01G133500.2	Wheat	cytosol	45.82	10.49
CDY59720	Canola	endoplasmic reticulum, extracellular	10.36	10.36
CDX75568	Canola	cytosol	45.42	8.46
CDX69218	Canola	cytosol	45.42	8.44
CDX71661	Canola	cytosol	1.99	3.03
CDX81913	Canola	nucleus	3.19	2.13

Protein Annotations

EnsemblPlants:CDX81912	EnsemblPlantsGene:GSBRNA2T00136872001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
PANTHER:PTHR23336	PANTHER:PTHR23336:SF7	PFAM:PF13589	ProteinID:CDX81912	ProteinID:CDX81912.1	SUPFAM:SSF55874
UniParc:UPI0004EE0487	MapMan:12.5.1.2	:	:	:	:

Description

BnaC08g36890D

Coordinates

chrLK031826:+:1440501..1442217

Molecular Weight (calculated)

27519.2 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.397

Length

251 amino acids

Sequence
(BLAST)

001: MSYNASTQVT HDALVVKPEH RYGSKGQAIP QDSEENRGSI GAQSSTSVVD QVRTPPEDAG VTSSSTICPA PVCRQFWKAG SYIDELSSKS QQPTGKNYLH
101: VHPMFLHSNA TSHKWAFGAV AELLDNAVDE IQNGATFVIV DKTTNPKDST TALLVQDDGG GMDPQAMRHC MGFGFSDKKS DSAIGRYGNG FKTSTMRLGA
201: DVIVFSRHFK DQTWTQSIGL LSYTYLTRTG HDRIVVPILD YDILYPISPF Y

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.