CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81913	Canola	nucleus	55.9	96.0
Bra031063.1-P	Field mustard	nucleus	97.36	94.14
CDX81912	Canola	nucleus	36.65	94.02
CDY41018	Canola	nucleus	86.65	82.06
AT1G19100.1	Thale cress	nucleus	82.45	80.09
VIT_17s0000g08750.t01	Wine grape	nucleus	57.45	52.19
Solyc06g071580.2.1	Tomato	cytosol	47.52	50.92
KRH63565	Soybean	cytosol	52.95	49.56
GSMUA_Achr9P25210_001	Banana	cytosol	39.13	48.18
Solyc01g099300.2.1	Tomato	nucleus	50.31	45.44
KRH03266	Soybean	mitochondrion	46.89	44.74
GSMUA_Achr4P13250_001	Banana	cytosol	40.99	42.65
TraesCS3D01G202400.1	Wheat	cytosol	42.24	41.91
HORVU3Hr1G046280.3	Barley	cytosol	42.08	41.76
TraesCS3B01G231900.1	Wheat	cytosol	42.08	41.76
TraesCS3A01G192600.2	Wheat	cytosol	42.08	41.76
Os01t0549200-02	Rice	cytosol, peroxisome, plastid	22.52	39.94
EES00907	Sorghum	cytosol	41.77	39.79
Os11t0454800-01	Rice	cytosol	27.8	39.51
Zm00001d044506_P006	Maize	cytosol	41.46	38.09
TraesCS3B01G359600.1	Wheat	cytosol	40.53	37.07
TraesCS3A01G329400.1	Wheat	plastid	40.37	36.26
TraesCS3D01G322900.1	Wheat	plastid	40.37	36.16
Zm00001d043191_P005	Maize	cytosol	41.3	36.04
KXG33558	Sorghum	cytosol	40.99	35.82
EER87847	Sorghum	plastid	40.53	35.46
Zm00001d012575_P001	Maize	mitochondrion, nucleus	39.75	34.13
CDY34330	Canola	nucleus	34.78	33.14
CDY11045	Canola	nucleus	35.71	33.0
CDX92664	Canola	nucleus	35.4	32.95
CDY03400	Canola	nucleus	34.32	32.84
HORVU3Hr1G078330.4	Barley	endoplasmic reticulum, plasma membrane	40.68	32.83
CDY52039	Canola	plastid	33.7	31.59
CDX84021	Canola	plastid	33.23	31.01
CDX71661	Canola	cytosol	7.92	30.91
CDX84876	Canola	nucleus	35.87	30.47
CDY45818	Canola	nucleus	35.71	29.68
HORVU7Hr1G048310.12	Barley	cytosol	40.06	29.45
CDY59720	Canola	endoplasmic reticulum, extracellular	10.87	27.89
CDY59688	Canola	golgi, plasma membrane, plastid	7.61	27.68
CDX97228	Canola	nucleus, plastid	33.7	26.14
CDX69668	Canola	nucleus, plastid	33.7	26.08
OQU76414	Sorghum	cytosol	38.2	25.95
TraesCS7A01G235300.2	Wheat	nucleus	40.06	25.72
Zm00001d045978_P002	Maize	cytosol	36.96	24.36
TraesCS7D01G235400.1	Wheat	cytosol	38.98	23.86
TraesCS7B01G133500.2	Wheat	cytosol	38.98	22.9
CDX69218	Canola	cytosol	37.58	17.91
CDX75568	Canola	cytosol	37.11	17.74

Protein Annotations

EnsemblPlants:CDY21683	EnsemblPlantsGene:GSBRNA2T00016173001	Gene3D:3.30.565.10	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890
ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF44	PFAM:PF13589	ProteinID:CDY21683	ProteinID:CDY21683.1
SUPFAM:SSF55874	UniParc:UPI0004EE0857	UniProt:A0A078GAE8	MapMan:12.5.1.2	:	:

Description

BnaA09g44340DBnaA09g44340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAE8]

Coordinates

chrLK032123:-:164369..169769

Molecular Weight (calculated)

72402.1 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.481

Length

644 amino acids

Sequence
(BLAST)

001: MSYNASINVS HDALVVKPEH RYGSKGLVLP QDSEENRGSL GAQSSTSVVD QVRTPPEDAG VTSSSTICPA PVCRQFWKAG SYSDELSSKS QQPTGKNYLH
101: VHPMFLHSNA TSHKWAFGAV AELLDNAVDE IQNGATFVIV DKTTNPKDGT TALLVQDDGG GMDPQAMRHC MGFGFSDKKS DSAIGRYGNG FKTSTMRLGA
201: DVIVFSRHYK NQTWTQSIGL LSYTYLTRTG HDRIVVPILD YEYKASTSQF RQNFYSRQGQ LSFKFLCIQP ILFTFDNVGS HGTKVIIYNL WLNSDAKLEL
301: DFDSDAEDIL IEGNIKKTGC KIMNDHIATR FSYSLRVYLS ILYLRIPETF KILLRGKVVE HHNVADDLKH QQYILYKPQA AGHEEAEVVT TIGFLKEAPK
401: VNLCGFCVYH KNRLIMPFWQ VVSYSNSRGR GVVGALEANF VEPTHNKQDF EKTVLLQKLE KRLKEMTVEY WNCHSVLIGY RDLKKRRPTA PQNLQPDSGR
501: QTINPPPGFP GVFHNANLAS LPRVSSEPVV LEKRKEHPDL VASAASKRKV GNDGFSVPGH IRVEQFVQGS ATRSQDSETT KLMDENKKLR AKCLDHKVRS
601: QNLEIKAMNL RSEVEKVKSE YERLMEELQA LGTVKEERSR NVNT

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.