CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21683	Canola	nucleus	96.0	55.9
CDY41018	Canola	nucleus	84.8	46.76
AT1G19100.1	Thale cress	nucleus	80.0	45.25
CDX71661	Canola	cytosol	13.07	29.7
VIT_17s0000g08750.t01	Wine grape	nucleus	51.73	27.36
Solyc06g071580.2.1	Tomato	cytosol	43.2	26.96
KRH63565	Soybean	cytosol	47.73	26.02
Solyc01g099300.2.1	Tomato	nucleus	46.67	24.54
KRH03266	Soybean	mitochondrion	43.2	24.0
GSMUA_Achr9P25210_001	Banana	cytosol	32.0	22.94
TraesCS3D01G202400.1	Wheat	cytosol	38.67	22.34
TraesCS3B01G231900.1	Wheat	cytosol	38.4	22.19
TraesCS3A01G192600.2	Wheat	cytosol	38.4	22.19
HORVU3Hr1G046280.3	Barley	cytosol	38.13	22.03
GSMUA_Achr4P13250_001	Banana	cytosol	36.27	21.97
EES00907	Sorghum	cytosol	39.2	21.75
Zm00001d044506_P006	Maize	cytosol	38.93	20.83
TraesCS3B01G359600.1	Wheat	cytosol	37.87	20.17
KXG33558	Sorghum	cytosol	39.2	19.95
EER87847	Sorghum	plastid	38.67	19.7
Zm00001d043191_P005	Maize	cytosol	38.67	19.65
TraesCS3A01G329400.1	Wheat	plastid	37.33	19.53
TraesCS3D01G322900.1	Wheat	plastid	37.33	19.47
Zm00001d012575_P001	Maize	mitochondrion, nucleus	38.67	19.33
CDY59720	Canola	endoplasmic reticulum, extracellular	12.27	18.33
HORVU3Hr1G078330.4	Barley	endoplasmic reticulum, plasma membrane	38.13	17.92
CDY34330	Canola	nucleus	30.67	17.01
CDY03400	Canola	nucleus	30.4	16.94
CDX92664	Canola	nucleus	30.93	16.76
CDY52039	Canola	plastid	30.67	16.74
CDY11045	Canola	nucleus	30.93	16.64
CDX84021	Canola	plastid	29.87	16.23
CDX84876	Canola	nucleus	32.53	16.09
CDY45818	Canola	nucleus	32.53	15.74
HORVU7Hr1G048310.12	Barley	cytosol	36.53	15.64
CDX97228	Canola	nucleus, plastid	31.2	14.1
CDX69668	Canola	nucleus, plastid	31.2	14.06
OQU76414	Sorghum	cytosol	35.47	14.03
TraesCS7A01G235300.2	Wheat	nucleus	36.27	13.56
Zm00001d045978_P002	Maize	cytosol	34.67	13.31
Os11t0454800-01	Rice	cytosol	15.73	13.02
TraesCS7D01G235400.1	Wheat	cytosol	34.67	12.36
TraesCS7B01G133500.2	Wheat	cytosol	35.47	12.13
CDY59688	Canola	golgi, plasma membrane, plastid	4.8	10.17
CDX69218	Canola	cytosol	35.2	9.77
CDX75568	Canola	cytosol	34.4	9.58
Os01t0549200-02	Rice	cytosol, peroxisome, plastid	6.13	6.34
CDX81912	Canola	nucleus	2.13	3.19

Protein Annotations

EnsemblPlants:CDX81913	EnsemblPlantsGene:GSBRNA2T00136873001	ncoils:Coil	PANTHER:PTHR23336	PANTHER:PTHR23336:SF44	ProteinID:CDX81913
ProteinID:CDX81913.1	UniParc:UPI0004EE919A	MapMan:12.5.1.2	:	:	:

Description

BnaC08g36880D

Coordinates

chrLK031826:+:1442286..1445662

Molecular Weight (calculated)

42834.4 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.545

Length

375 amino acids

Sequence
(BLAST)

001: MHSTHFDNVG SHGTKVIIYN LWLNSDAKLE LDFDSDAEDI LIEGNIKKTG CKIMNDHIAT RFSYSLRVYL SILYLRIPET FKILLRGKVV EHHNVADDLK
101: HQQYILYKPQ AAGHEEAGVV TTIGFLKEAP KVNLCGFCVY HKNRLIMPFW QVVSYSDSRG RGVVGALEAN FVEPTHNKQD FEKTVLLQKL EKRLKEMTVE
201: YWNCHSVLIG YRDLKKRRPK VPQNLQPDSG RQTINRPPGF PGVFHNANLA SLPRVSSEPV VLEKRKEHPD LVANATSKRK VGSDGFSVPG HIRVEQFVQG
301: SATRSQDSET TKLMDENKKL RAKCLDHRVR SQNLELKAMN LSSELEKVKS EYERLMEELQ ALGTVKEERS RNVNT

Best Arabidopsis Sequence Match ( AT1G19100.1 )
(BLAST)

001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT

Arabidopsis Description

MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.