Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047834_P004 | Maize | cytosol | 89.8 | 83.9 |
| Os03t0268100-01 | Rice | nucleus | 83.45 | 82.7 |
| TraesCS4A01G093700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 81.63 | 81.45 |
| TraesCS4D01G211400.1 | Wheat | cytosol | 80.73 | 80.54 |
| TraesCS4B01G210700.2 | Wheat | cytosol | 79.82 | 80.37 |
| Zm00001d028569_P002 | Maize | cytosol | 94.33 | 71.6 |
| HORVU4Hr1G060500.11 | Barley | cytosol, nucleus | 74.38 | 66.13 |
| GSMUA_Achr2P16570_001 | Banana | nucleus | 58.28 | 58.54 |
| CDY22263 | Canola | cytosol | 12.24 | 54.55 |
| VIT_06s0004g05490.t01 | Wine grape | nucleus | 54.65 | 53.91 |
| AT5G59210.1 | Thale cress | nucleus | 51.7 | 52.53 |
| KRH10215 | Soybean | cytosol | 50.79 | 51.73 |
| KRH23112 | Soybean | nucleus | 50.79 | 51.73 |
| CDY02864 | Canola | extracellular, golgi, vacuole | 36.28 | 48.93 |
| Solyc09g055760.2.1 | Tomato | nucleus | 46.71 | 46.71 |
Protein Annotations
| EnsemblPlants:EER92496 | EnsemblPlantsGene:SORBI_3001G424800 | EntrezGene:8084951 | ncoils:Coil | ProteinID:EER92496 | ProteinID:EER92496.1 |
| RefSeq:XP_002465498.1 | SEG:seg | unigene:Sbi.7655 | UniParc:UPI0001A82CF4 | UniProt:C5WQ32 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr1:+:70489003..70492875
Molecular Weight (calculated)
50472.8 Da
IEP (calculated)
4.943
GRAVY (calculated)
-0.827
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAHASRGRR TLEEIRQKRA AERMQHALPI AASHVDSHGN QRAGAELLAR VQELENGNME LERENKMLLS KIAEKEVEKD ALVNRLNDLE RNVVPSLKKT
101: LNDISLEKDA AVVAKEDALA QLRSMKKRLK EAEEEQYRAE EDSASLRAQL NTLQQQVMGH SYSGYTMGTS NEESVSMEKE IQDLQAQLKQ ESLLRQQEQQ
201: KLAEESQLRQ QEQEKLAKEQ IRIASLEAEK QQLEDQITML TKKATDDASE FAARKAFSLQ DREKLENQLH DMALMIERLE GSRQKLLMEI DSQSSEIEKL
301: FEENSAVSTS YQEAMAITVQ WENQVRDCLK QNEELRSHLE KLRLEQASLL KVSNIATQSD GQIENSSNPP EMVTENISLK DQLIKEQSRS EGLSAEIMKL
401: SAELRKAVQA QNNLARLYRP VLRDIESNLM KMKQETYATI Q
101: LNDISLEKDA AVVAKEDALA QLRSMKKRLK EAEEEQYRAE EDSASLRAQL NTLQQQVMGH SYSGYTMGTS NEESVSMEKE IQDLQAQLKQ ESLLRQQEQQ
201: KLAEESQLRQ QEQEKLAKEQ IRIASLEAEK QQLEDQITML TKKATDDASE FAARKAFSLQ DREKLENQLH DMALMIERLE GSRQKLLMEI DSQSSEIEKL
301: FEENSAVSTS YQEAMAITVQ WENQVRDCLK QNEELRSHLE KLRLEQASLL KVSNIATQSD GQIENSSNPP EMVTENISLK DQLIKEQSRS EGLSAEIMKL
401: SAELRKAVQA QNNLARLYRP VLRDIESNLM KMKQETYATI Q
001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASVS ESGQKVFSVE DKEKLEKQLH DMAVALERLE SSRQKLLMEI DNQSSEIEKL
301: FEENSNLSAS YQESINISNQ WENQVKECLK QNVELREVLD KLRTEQAGSF SRGPSEFEAN GSHGTDTLSL KGELAKEQSR AESLSAQVLQ LSAQLQQATQ
401: AYNGLMRIYK PVLRNIESSL IKLKQDGSVT VAQ
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASVS ESGQKVFSVE DKEKLEKQLH DMAVALERLE SSRQKLLMEI DNQSSEIEKL
301: FEENSNLSAS YQESINISNQ WENQVKECLK QNVELREVLD KLRTEQAGSF SRGPSEFEAN GSHGTDTLSL KGELAKEQSR AESLSAQVLQ LSAQLQQATQ
401: AYNGLMRIYK PVLRNIESSL IKLKQDGSVT VAQ
Arabidopsis Description
AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.