Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050365_P006 | Maize | nucleus | 54.67 | 53.42 |
| Os08t0428400-01 | Rice | nucleus | 49.3 | 49.41 |
| EER98873 | Sorghum | nucleus | 40.89 | 42.89 |
| TraesCSU01G139100.1 | Wheat | nucleus | 27.34 | 33.14 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 27.34 | 33.05 |
| TraesCSU01G139000.1 | Wheat | nucleus | 26.4 | 31.39 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 25.93 | 31.27 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 21.73 | 30.79 |
| HORVU4Hr1G087520.3 | Barley | plastid | 22.2 | 27.46 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 25.7 | 26.83 |
| CDX95570 | Canola | plastid | 9.35 | 26.67 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.55 | 26.36 |
| Bra016193.1-P | Field mustard | nucleus | 15.19 | 26.1 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 25.0 | 26.1 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.0 | 25.78 |
| AT1G48500.1 | Thale cress | nucleus | 18.46 | 25.48 |
| Solyc03g118540.2.1 | Tomato | cytosol | 19.39 | 25.46 |
| KRH38274 | Soybean | cytosol | 18.22 | 24.45 |
| Bra007937.1-P | Field mustard | nucleus | 14.02 | 24.0 |
| PGSC0003DMT400036790 | Potato | cytosol | 21.73 | 23.85 |
| PGSC0003DMT400074101 | Potato | nucleus | 14.02 | 23.72 |
| Solyc01g005440.2.1 | Tomato | cytosol | 17.06 | 23.62 |
| KRH60357 | Soybean | nucleus | 20.09 | 23.18 |
| Bra022254.1-P | Field mustard | nucleus | 17.99 | 22.99 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 20.56 | 22.92 |
| KRH41663 | Soybean | cytosol | 19.63 | 22.76 |
| Solyc06g068930.1.1 | Tomato | nucleus | 13.08 | 22.76 |
| Bra021281.1-P | Field mustard | nucleus | 18.69 | 22.66 |
| AT1G70700.3 | Thale cress | cytosol | 14.49 | 22.46 |
| AT3G17860.1 | Thale cress | nucleus | 18.46 | 22.44 |
| PGSC0003DMT400081778 | Potato | cytosol | 17.52 | 22.19 |
| KRH39044 | Soybean | nucleus | 19.39 | 21.5 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 19.63 | 21.21 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8075393 | UniProt:C5YL41 | InterPro:CCT_CS | EnsemblPlants:EES15016 | ProteinID:EES15016 |
| ProteinID:EES15016.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | SMART:SM00979 | EnsemblPlantsGene:SORBI_3007G132700 | unigene:Sbi.15916 | InterPro:Tify_dom |
| UniParc:UPI0001A87B0E | RefSeq:XP_002445521.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:55342328..55345325
Molecular Weight (calculated)
45306.5 Da
IEP (calculated)
10.029
GRAVY (calculated)
-0.340
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGVID RAAGKGGGDV VVVEDSRTEL AEAAQWQFPA KSGSGAPAFM SFRTARGEEG SEEFSISGFR PAGDALDGIK KQTSLPAVIS QHQQQQRQFG
101: LSSSQVTAQQ YPAAAHGGQR LQGMDYSAAA LHHLPGGSRL VQPLSVRHPA PFNQANLMVR SQSFHNGTGV PSRNQQPFTM SNGFGGSTVG VYGARNPRNQ
201: TSTQLTIFYN GSVNVFDNVP VEKAKELMML ASRASIPSPP IASHKLDSPI SAPAKVNVPE VFPARQIVIQ KPEPCVPHVT STSSPIPIVP QVVTLSRSTS
301: HCTTEACGSK PAVQSPVIAP ITQATSSQPL ATTSAAAVTP RAVPQARKAS LARFLEKRKE RVTSVEPYPT SKSPLEGSDT VGNASAPTKS SFTDIAPASN
401: YGTEPVRLGQ PRNISFSSEV CPSTKLQI
101: LSSSQVTAQQ YPAAAHGGQR LQGMDYSAAA LHHLPGGSRL VQPLSVRHPA PFNQANLMVR SQSFHNGTGV PSRNQQPFTM SNGFGGSTVG VYGARNPRNQ
201: TSTQLTIFYN GSVNVFDNVP VEKAKELMML ASRASIPSPP IASHKLDSPI SAPAKVNVPE VFPARQIVIQ KPEPCVPHVT STSSPIPIVP QVVTLSRSTS
301: HCTTEACGSK PAVQSPVIAP ITQATSSQPL ATTSAAAVTP RAVPQARKAS LARFLEKRKE RVTSVEPYPT SKSPLEGSDT VGNASAPTKS SFTDIAPASN
401: YGTEPVRLGQ PRNISFSSEV CPSTKLQI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.