Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022139_P001 | Maize | plastid | 74.89 | 75.54 |
| TraesCS2B01G195600.1 | Wheat | plastid | 55.74 | 56.71 |
| TraesCS2D01G176800.1 | Wheat | plastid | 54.89 | 55.84 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 56.6 | 55.65 |
| Os07t0615200-01 | Rice | mitochondrion | 57.02 | 54.92 |
| TraesCS2A01G169300.1 | Wheat | plastid | 49.79 | 50.65 |
| EER92157 | Sorghum | plastid | 45.96 | 47.37 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 40.0 | 42.53 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 31.49 | 35.41 |
| GSMUA_Achr11P... | Banana | cytosol | 34.47 | 34.91 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 36.17 | 33.6 |
| Solyc07g042170.2.1 | Tomato | cytosol | 30.64 | 33.33 |
| PGSC0003DMT400075155 | Potato | nucleus | 29.79 | 32.56 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 37.02 | 32.46 |
| CDY37269 | Canola | nucleus | 32.34 | 31.67 |
| CDX68156 | Canola | cytosol | 24.26 | 31.49 |
| CDY46022 | Canola | nucleus | 31.91 | 31.25 |
| CDY26697 | Canola | plastid | 33.62 | 31.23 |
| Bra008172.1-P | Field mustard | nucleus | 31.49 | 30.83 |
| Bra025713.1-P | Field mustard | plastid | 33.19 | 30.71 |
| EER98969 | Sorghum | cytosol | 28.51 | 30.32 |
| CDY41023 | Canola | plastid | 32.77 | 30.32 |
| CDY45408 | Canola | cytosol | 31.49 | 30.2 |
| Bra015880.1-P | Field mustard | cytosol | 31.49 | 30.2 |
| CDX73127 | Canola | cytosol | 31.49 | 30.2 |
| CDX96675 | Canola | plastid | 32.77 | 29.28 |
| PGSC0003DMT400007592 | Potato | nucleus | 31.49 | 29.13 |
| Solyc12g009220.1.1 | Tomato | nucleus | 31.06 | 28.97 |
| AT1G74950.1 | Thale cress | cytosol | 30.64 | 28.92 |
| Bra003778.1-P | Field mustard | cytosol | 27.23 | 28.83 |
| CDX85865 | Canola | cytosol | 27.23 | 28.57 |
| Bra016520.1-P | Field mustard | plastid | 31.49 | 28.57 |
| AT1G19180.1 | Thale cress | cytosol | 30.21 | 28.06 |
| CDX83781 | Canola | plastid | 31.49 | 28.03 |
| Bra031065.1-P | Field mustard | plastid | 32.34 | 27.84 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 40.0 | 26.63 |
| CDX73289 | Canola | cytosol | 20.85 | 26.06 |
| OQU82468 | Sorghum | nucleus | 20.0 | 21.46 |
| CDX81917 | Canola | plastid | 31.91 | 14.76 |
| CDY21679 | Canola | plastid | 33.19 | 14.31 |
Protein Annotations
| MapMan:11.7.2.1.2 | MapMan:15.5.45 | EntrezGene:8079184 | UniProt:C5XE09 | InterPro:CCT_CS | EnsemblPlants:EER97533 |
| ProteinID:EER97533 | ProteinID:EER97533.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | PFAM:PF06200 | PFAM:PF09425 |
| PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF19 | SMART:SM00979 | EnsemblPlantsGene:SORBI_3002G374100 | unigene:Sbi.7108 |
| InterPro:Tify_dom | UniParc:UPI0001A83925 | RefSeq:XP_002461012.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:73193557..73195985
Molecular Weight (calculated)
24925.8 Da
IEP (calculated)
9.908
GRAVY (calculated)
-0.370
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASARPGER ATSFTVACSL LSRFVRQNGA AAAELGLGIK GEVEQQRTPA TISLLPGAEG EEAERTKETM ELFPQSAGFG VKDAAAPSEQ ENKEKPKQLT
101: IFYGGKVLVF DDFPADKAKD LMQLASKGSL VVQNVVLPQP SAPAAVTDKA VPAPVISLSA AQADAKKPAR TNASDMPIMR KASLHRFLEK RKDRLNAKTP
201: YQTSPSDAAP VKKEPESQAW LGLGPNAVKS NLSLS
101: IFYGGKVLVF DDFPADKAKD LMQLASKGSL VVQNVVLPQP SAPAAVTDKA VPAPVISLSA AQADAKKPAR TNASDMPIMR KASLHRFLEK RKDRLNAKTP
201: YQTSPSDAAP VKKEPESQAW LGLGPNAVKS NLSLS
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.