Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020614_P001 | Maize | cytosol, plastid | 61.99 | 62.84 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 62.9 | 61.23 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 45.25 | 43.48 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 45.25 | 43.48 |
| Os09t0439200-01 | Rice | plastid | 43.44 | 41.38 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 46.61 | 34.92 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 35.29 | 34.51 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 32.58 | 33.8 |
| TraesCS5A01G212800.1 | Wheat | plastid | 44.8 | 33.45 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 36.65 | 32.27 |
| Solyc07g042170.2.1 | Tomato | cytosol | 31.22 | 31.94 |
| PGSC0003DMT400075155 | Potato | nucleus | 30.77 | 31.63 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 35.29 | 31.58 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 33.94 | 31.12 |
| GSMUA_Achr10P... | Banana | cytosol | 22.62 | 30.86 |
| EER92157 | Sorghum | plastid | 30.77 | 29.82 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 35.75 | 29.81 |
| EER97533 | Sorghum | plastid | 30.32 | 28.51 |
| Bra008172.1-P | Field mustard | nucleus | 29.41 | 27.08 |
| PGSC0003DMT400007592 | Potato | nucleus | 30.77 | 26.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.86 | 26.72 |
| CDY46022 | Canola | nucleus | 28.96 | 26.67 |
| Solyc12g009220.1.1 | Tomato | nucleus | 30.32 | 26.59 |
| CDX85865 | Canola | cytosol | 26.24 | 25.89 |
| CDY37269 | Canola | nucleus | 28.05 | 25.83 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 31.22 | 25.75 |
| CDX73127 | Canola | cytosol | 28.51 | 25.71 |
| AT1G19180.1 | Thale cress | cytosol | 29.41 | 25.69 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 28.05 | 25.62 |
| AT1G74950.1 | Thale cress | cytosol | 28.51 | 25.3 |
| Bra015880.1-P | Field mustard | cytosol | 27.6 | 24.9 |
| CDY45408 | Canola | cytosol | 27.6 | 24.9 |
| Bra016520.1-P | Field mustard | plastid | 28.51 | 24.32 |
| Bra003778.1-P | Field mustard | cytosol | 24.43 | 24.32 |
| CDX68156 | Canola | cytosol | 19.91 | 24.31 |
| CDY26697 | Canola | plastid | 27.6 | 24.11 |
| Bra025713.1-P | Field mustard | plastid | 27.6 | 24.02 |
| CDX73289 | Canola | cytosol | 20.36 | 23.94 |
| CDX83781 | Canola | plastid | 28.51 | 23.86 |
| Bra031065.1-P | Field mustard | plastid | 29.41 | 23.81 |
| CDY41023 | Canola | plastid | 27.15 | 23.62 |
| CDX96675 | Canola | plastid | 27.6 | 23.19 |
| OQU82468 | Sorghum | nucleus | 21.27 | 21.46 |
| CDX81917 | Canola | plastid | 27.15 | 11.81 |
| CDY21679 | Canola | plastid | 28.51 | 11.56 |
Protein Annotations
| MapMan:15.5.45 | EntrezGene:8062740 | UniProt:C5XDP2 | InterPro:CCT_CS | EnsemblPlants:EER98969 | ProteinID:EER98969 |
| ProteinID:EER98969.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF12 | SMART:SM00979 | EnsemblPlantsGene:SORBI_3002G214800 | unigene:Sbi.2098 | InterPro:Tify_dom |
| UniParc:UPI0001A840BD | RefSeq:XP_002462448.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:60694460..60696521
Molecular Weight (calculated)
23383.7 Da
IEP (calculated)
9.899
GRAVY (calculated)
-0.476
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRAPATAR DKTSFAATCS LLSQYLKEKK DGGLQRLGGL AMAPAAGAGA GGFRPPTTMN LLSALDAPAE EPTSDAAKAT VEEPKDHHKS TAGNPREAAG
101: DEAQQLTIFY GGKVVVFDKF PSTKVKDLLQ IMNPGGDRVD RAGATATVPT QSLPTPSHNS LSDLPIARRN SLHRFLEKRK DRITAKAPYQ VNSSAGVEAS
201: FKVEKPWLGL GQEAATVKQE M
101: DEAQQLTIFY GGKVVVFDKF PSTKVKDLLQ IMNPGGDRVD RAGATATVPT QSLPTPSHNS LSDLPIARRN SLHRFLEKRK DRITAKAPYQ VNSSAGVEAS
201: FKVEKPWLGL GQEAATVKQE M
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.