Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0519100-00 | Rice | nucleus | 58.33 | 60.98 |
| TraesCSU01G222600.1 | Wheat | nucleus | 53.99 | 60.57 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 53.99 | 60.57 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 55.8 | 60.16 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 54.71 | 58.98 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 57.97 | 58.61 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 56.52 | 58.21 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 57.25 | 57.88 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 56.88 | 57.3 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 56.88 | 57.09 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 55.8 | 56.41 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 55.43 | 55.64 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 52.9 | 55.09 |
| EER99201 | Sorghum | nucleus | 58.33 | 54.39 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 49.64 | 53.52 |
| KXG25462 | Sorghum | nucleus | 51.09 | 50.72 |
| OQU80776 | Sorghum | nucleus | 47.83 | 50.19 |
| OQU75588 | Sorghum | nucleus | 47.83 | 50.19 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 38.04 | 50.0 |
| OQU80777 | Sorghum | nucleus | 44.93 | 44.29 |
| OQU80778 | Sorghum | nucleus | 42.75 | 43.7 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 43.48 | 43.01 |
| OQU86344 | Sorghum | nucleus | 39.49 | 42.58 |
| Bra017527.1-P | Field mustard | nucleus | 25.0 | 30.53 |
| Bra013263.1-P | Field mustard | nucleus | 25.36 | 25.83 |
| Bra024992.1-P | Field mustard | nucleus | 23.91 | 24.35 |
| VIT_02s0025g02610.t01 | Wine grape | nucleus | 29.71 | 22.71 |
| CDY70013 | Canola | nucleus | 20.29 | 22.22 |
| KRH47834 | Soybean | nucleus | 36.59 | 21.77 |
| KRH06400 | Soybean | nucleus | 35.14 | 20.82 |
| Solyc10g009290.1.1 | Tomato | nucleus | 33.7 | 20.62 |
| PGSC0003DMT400014089 | Potato | nucleus | 28.26 | 20.31 |
| PGSC0003DMT400047220 | Potato | nucleus | 32.97 | 20.13 |
| PGSC0003DMT400014097 | Potato | nucleus | 33.33 | 20.13 |
| VIT_15s0048g02820.t01 | Wine grape | nucleus | 36.23 | 20.12 |
| PGSC0003DMT400028057 | Potato | nucleus | 28.26 | 20.05 |
| Solyc01g096370.2.1 | Tomato | nucleus | 32.61 | 20.0 |
| Solyc08g083170.1.1 | Tomato | extracellular | 27.9 | 19.9 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 30.43 | 19.86 |
| PGSC0003DMT400031899 | Potato | plastid | 30.8 | 19.72 |
| Solyc10g009270.2.1 | Tomato | nucleus | 27.54 | 19.34 |
| Bra017520.1-P | Field mustard | nucleus | 29.35 | 16.27 |
| AT5G46830.1 | Thale cress | nucleus | 30.07 | 16.24 |
| Solyc08g008600.2.1 | Tomato | nucleus | 26.45 | 16.15 |
| Bra017523.1-P | Field mustard | nucleus | 29.35 | 15.98 |
| PGSC0003DMT400015017 | Potato | nucleus | 26.09 | 15.79 |
| EES01345 | Sorghum | nucleus | 27.17 | 15.5 |
| AT5G46760.1 | Thale cress | nucleus | 32.61 | 15.2 |
| Bra024998.1-P | Field mustard | nucleus | 31.88 | 15.17 |
| Bra010178.1-P | Field mustard | nucleus | 32.97 | 15.17 |
| AT1G32640.1 | Thale cress | nucleus | 33.33 | 14.77 |
| AT4G17880.1 | Thale cress | nucleus | 30.8 | 14.43 |
| Bra024993.1-P | Field mustard | nucleus | 19.2 | 14.06 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 33.7 | 14.03 |
| KRH75613 | Soybean | nucleus | 32.25 | 13.97 |
| KRH45440 | Soybean | nucleus | 32.97 | 13.91 |
| EES10849 | Sorghum | nucleus | 17.39 | 13.91 |
| PGSC0003DMT400002963 | Potato | nucleus | 30.07 | 13.88 |
| Solyc08g005050.2.1 | Tomato | nucleus | 22.83 | 13.58 |
| KRH74418 | Soybean | nucleus | 31.16 | 13.4 |
| KXG39194 | Sorghum | nucleus | 33.33 | 13.01 |
| Solyc08g076930.1.1 | Tomato | nucleus | 32.25 | 12.92 |
| PGSC0003DMT400045204 | Potato | nucleus | 32.25 | 12.82 |
| EER93685 | Sorghum | mitochondrion | 17.03 | 12.63 |
| KXG37671 | Sorghum | nucleus | 15.94 | 12.36 |
| KXG39824 | Sorghum | nucleus | 14.49 | 12.27 |
| KXG37866 | Sorghum | nucleus | 16.3 | 12.13 |
| KXG24110 | Sorghum | nucleus | 17.39 | 12.06 |
| EER93684 | Sorghum | nucleus | 16.67 | 11.95 |
| KRH39540 | Soybean | nucleus | 31.52 | 11.9 |
| EER99993 | Sorghum | nucleus | 26.81 | 11.9 |
| OQU75589 | Sorghum | nucleus | 16.3 | 11.69 |
| OQU77369 | Sorghum | nucleus | 17.75 | 11.67 |
| EES19274 | Sorghum | nucleus | 24.64 | 11.58 |
| OQU92032 | Sorghum | nucleus | 13.41 | 10.88 |
| OQU92034 | Sorghum | nucleus | 12.32 | 10.73 |
| OQU82119 | Sorghum | nucleus | 18.84 | 9.52 |
| OQU82120 | Sorghum | nucleus | 19.2 | 9.01 |
| OQU81560 | Sorghum | nucleus | 18.84 | 8.83 |
| OQU82117 | Sorghum | nucleus | 18.48 | 8.64 |
| OQU88697 | Sorghum | nucleus | 19.57 | 7.98 |
| Bra013264.1-P | Field mustard | nucleus | 7.61 | 7.07 |
| CDY70012 | Canola | nucleus | 5.8 | 5.99 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8054858 | UniProt:C5X606 | ncoils:Coil | EnsemblPlants:EER97058 |
| ProteinID:EER97058 | ProteinID:EER97058.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF68 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3002G267000 | SUPFAM:SSF47459 | UniParc:UPI0001A8390D | RefSeq:XP_002460537.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:65126280..65127377
Molecular Weight (calculated)
29256.7 Da
IEP (calculated)
5.976
GRAVY (calculated)
-0.287
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLTSPSSP RPASFSFSEP SCTILELPSC EVPEQWLLDD DVLVGKNEND GIGACLWEMP AADGGVLSPD SELAKLLPSL SAPAPQRQAK RRGRKPGPRP
101: GPGAGAAAGH VESERQRREK LNRRFCDLRA AVPTVSRMDK ASLLADAARY IAELRARVAQ LESEARHAAV ARWEGISADG GGHGDQAAAV VDGELYVREV
201: GRDTAVVRVT SGASHAPALL MGALRSLELQ VQHACVSRAH GVTTQDVVVD VPPAATALQD DEGLRMALLQ RLQAGD
101: GPGAGAAAGH VESERQRREK LNRRFCDLRA AVPTVSRMDK ASLLADAARY IAELRARVAQ LESEARHAAV ARWEGISADG GGHGDQAAAV VDGELYVREV
201: GRDTAVVRVT SGASHAPALL MGALRSLELQ VQHACVSRAH GVTTQDVVVD VPPAATALQD DEGLRMALLQ RLQAGD
001: MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY
Arabidopsis Description
MYC3Transcription factor MYC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.