Factsheet for PGSC0003DMT400014089

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028057	Potato	nucleus	97.66	96.4
PGSC0003DMT400028054	Potato	cytosol	48.7	94.92
PGSC0003DMT400028052	Potato	nucleus	49.48	93.6
Solyc10g009270.2.1	Tomato	nucleus	90.1	88.04
PGSC0003DMT400014097	Potato	nucleus	58.59	49.23
PGSC0003DMT400047220	Potato	nucleus	52.34	44.47
KRH06400	Soybean	nucleus	47.66	39.27
KRH47834	Soybean	nucleus	47.14	39.01
PGSC0003DMT400031899	Potato	plastid	42.45	37.82
PGSC0003DMT400015017	Potato	nucleus	44.01	37.06
HORVU5Hr1G080040.1	Barley	nucleus	22.14	31.72
TraesCS2B01G469200.1	Wheat	nucleus	20.31	31.71
TraesCSU01G222600.1	Wheat	nucleus	20.31	31.71
TraesCS5A01G306600.1	Wheat	nucleus	22.4	31.27
TraesCS7D01G102200.1	Wheat	nucleus	20.83	31.25
TraesCS2B01G469300.1	Wheat	nucleus	20.83	31.25
TraesCS2A01G448500.1	Wheat	nucleus	20.83	31.25
TraesCS5D01G313600.1	Wheat	nucleus	22.66	31.18
TraesCS5D01G313500.1	Wheat	nucleus	22.66	31.18
TraesCS5A01G306700.1	Wheat	peroxisome	22.14	31.02
TraesCS1D01G374800.1	Wheat	nucleus	21.35	30.94
TraesCS5A01G306200.1	Wheat	nucleus	22.4	30.82
TraesCS5B01G307000.1	Wheat	nucleus	22.4	30.82
TraesCS5B01G307100.1	Wheat	nucleus	21.88	30.77
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	13.02	30.49
HORVU5Hr1G080080.1	Barley	nucleus, plastid	16.67	30.48
TraesCS5B01G306600.1	Wheat	nucleus	21.61	30.4
Zm00001d031717_P001	Maize	nucleus	20.05	30.32
TraesCS1A01G369200.1	Wheat	nucleus	15.62	30.3
TraesCS5A01G306500.1	Wheat	nucleus	22.14	30.25
TraesCS5D01G313700.1	Wheat	nucleus	21.61	30.18
TraesCS5D01G313400.1	Wheat	nucleus	21.35	30.04
TraesCS5B01G306800.1	Wheat	nucleus	21.88	30.0
TraesCS1B01G387900.1	Wheat	nucleus	18.49	29.71
Os09t0519100-00	Rice	nucleus	20.31	29.55
OQU80777	Sorghum	nucleus	21.35	29.29
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	20.05	29.28
TraesCS5A01G306400.1	Wheat	nucleus	16.67	28.7
OQU80776	Sorghum	nucleus	19.53	28.52
OQU75588	Sorghum	nucleus	19.53	28.52
KXG25462	Sorghum	nucleus	20.57	28.42
Zm00001d052728_P001	Maize	nucleus	20.31	28.36
EER97058	Sorghum	cytosol, nucleus, plastid	20.31	28.26
EER99201	Sorghum	nucleus	21.61	28.04
HORVU5Hr1G079900.1	Barley	cytosol	19.53	27.78
OQU86344	Sorghum	nucleus	18.49	27.73
Zm00001d006150_P001	Maize	nucleus	20.83	27.49
OQU80778	Sorghum	nucleus	19.27	27.41
Zm00001d021164_P001	Maize	nucleus	20.31	26.9
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	17.97	24.73
PGSC0003DMT400002963	Potato	nucleus	38.02	24.41
PGSC0003DMT400051672	Potato	nucleus	29.95	24.11
PGSC0003DMT400045204	Potato	nucleus	38.54	21.33
PGSC0003DMT400033757	Potato	nucleus	11.46	20.95
HORVU1Hr1G050560.1	Barley	nucleus	37.24	20.91
PGSC0003DMT400000652	Potato	nucleus	32.29	20.74
TraesCS1B01G208000.1	Wheat	nucleus	37.24	20.63
TraesCS1D01G196900.1	Wheat	nucleus	37.24	20.58
Zm00001d030028_P001	Maize	nucleus	37.24	20.28
PGSC0003DMT400018046	Potato	extracellular, nucleus	30.47	20.24
KXG39194	Sorghum	nucleus	37.24	20.23
TraesCS1A01G193200.1	Wheat	nucleus	36.46	20.2
Zm00001d047017_P001	Maize	nucleus	36.98	20.2
Os10t0575000-01	Rice	nucleus	36.72	20.17
PGSC0003DMT400078698	Potato	nucleus	10.68	19.62
PGSC0003DMT400078696	Potato	nucleus	15.1	16.71
PGSC0003DMT400013074	Potato	nucleus	14.84	16.15
PGSC0003DMT400078699	Potato	nucleus	13.54	16.1
PGSC0003DMT400033569	Potato	nucleus	21.35	13.9
PGSC0003DMT400032140	Potato	nucleus	10.68	11.39

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1A3Q2	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400005525	PGSC:PGSC0003DMG400005525	EnsemblPlants:PGSC0003DMT400014089	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF40	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295BA17	InterPro:bHLH_dom	SEG:seg

Description

MYC2 [Source:PGSC_GENE;Acc:PGSC0003DMG400005525]

Coordinates

chr10:+:4991092..4993952

Molecular Weight (calculated)

44086.1 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.485

Length

384 amino acids

Sequence
(BLAST)

001: MDEPIFSTSS SPSSLQHRLQ YIFKNQTNYY SDWAYAIFWQ SSNNSLSLTW GDGHLNMKTT NNKDVEWFYL MSLAQCFSVG EGVVGKCFSS DSFVWLTGDQ
101: QFEFCHCERA KEAHYVHGIN TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI DQFDDFGLFY CLEAKKGEIV VGTTPQENKV GFKSKTSKKR
201: GRKGREICET QGNHVEAERQ RREKLNSRFY ALREVVPNVT KMDKATLLSD AVTYITQLKA KVDELESKLH NNYYYSEHKK KHKMENDNVV DNQSSTTSWD
301: HTMEIEVKMV GQDAMIRVQS ENVNYPSTRL MCALQEVELH VYHANISSVN DLMLHDILVK VPQGLETEDE VKNALLRSLK QITC

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.