Factsheet for Zm00001d031717_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002029_P003
Zm00001d005726_P001
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d013855_P002
Zm00001d020409_P002
Zm00001d020614_P001
Zm00001d021924_P001
Zm00001d022139_P001
Zm00001d026477_P002
Zm00001d029448_P001
Zm00001d032009_P001
Zm00001d033972_P002
Zm00001d044708_P001
Zm00001d046270_P001
Zm00001d050365_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	Zm00001d005813_P002	AT1G19180.1	18547396
AT1G32640.1	Zm00001d006860_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d020614_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d022139_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d029448_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d005726_P001	AT1G48500.1	19309455
AT1G32640.1	Zm00001d020409_P002	AT1G48500.1	19309455
AT1G32640.1	Zm00001d032009_P001	AT1G48500.1	19309455
AT1G32640.1	Zm00001d050365_P006	AT1G48500.1	19309455
AT1G32640.1	Zm00001d005726_P001	AT3G17860.1	17637675
AT1G32640.1	Zm00001d020409_P002	AT3G17860.1	17637675
AT1G32640.1	Zm00001d032009_P001	AT3G17860.1	17637675
AT1G32640.1	Zm00001d050365_P006	AT3G17860.1	17637675
AT1G32640.1	Zm00001d002029_P003	AT3G43440.1	19309455
AT1G32640.1	Zm00001d013855_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d021924_P001	AT3G43440.1	19309455
AT1G32640.1	Zm00001d026477_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d033972_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d044708_P001	AT3G43440.1	19309455
AT1G32640.1	Zm00001d046270_P001	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80776	Sorghum	nucleus	88.98	85.93
OQU75588	Sorghum	nucleus	88.98	85.93
Zm00001d052728_P001	Maize	nucleus	62.99	58.18
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	54.33	52.47
Zm00001d006150_P001	Maize	nucleus	55.51	48.45
Zm00001d021164_P001	Maize	nucleus	54.72	47.93
Bra017527.1-P	Field mustard	nucleus	28.74	32.3
Bra013263.1-P	Field mustard	nucleus	28.74	26.94
Bra024992.1-P	Field mustard	nucleus	25.2	23.62
VIT_02s0025g02610.t01	Wine grape	nucleus	31.89	22.44
CDY70013	Canola	nucleus	21.26	21.43
Solyc10g009290.1.1	Tomato	nucleus	36.22	20.4
AT4G00870.1	Thale cress	nucleus, plastid	33.86	20.33
KRH47834	Soybean	nucleus	37.01	20.26
PGSC0003DMT400014089	Potato	nucleus	30.32	20.05
PGSC0003DMT400028057	Potato	nucleus	30.71	20.05
KRH06400	Soybean	nucleus	36.61	19.96
PGSC0003DMT400047220	Potato	nucleus	35.04	19.69
Solyc01g096370.2.1	Tomato	nucleus	34.65	19.56
PGSC0003DMT400014097	Potato	nucleus	34.65	19.26
Solyc10g009270.2.1	Tomato	nucleus	29.53	19.08
Solyc08g083170.1.1	Tomato	extracellular	28.74	18.86
VIT_15s0048g02820.t01	Wine grape	nucleus	35.43	18.11
PGSC0003DMT400031899	Potato	plastid	30.32	17.87
Bra017520.1-P	Field mustard	nucleus	31.89	16.27
Zm00001d026009_P001	Maize	plastid	12.99	16.18
Zm00001d038966_P001	Maize	plastid	12.99	16.18
Bra017523.1-P	Field mustard	nucleus	31.89	15.98
AT5G46830.1	Thale cress	nucleus	31.89	15.85
Bra024998.1-P	Field mustard	nucleus	35.04	15.34
Zm00001d043706_P001	Maize	nucleus	27.56	14.99
PGSC0003DMT400002963	Potato	nucleus	35.04	14.88
Solyc08g005050.2.1	Tomato	nucleus	27.17	14.87
AT5G46760.1	Thale cress	nucleus	34.65	14.86
Zm00001d033413_P001	Maize	nucleus	18.5	14.78
PGSC0003DMT400015017	Potato	nucleus	26.38	14.69
Bra010178.1-P	Field mustard	nucleus	34.65	14.67
Solyc08g008600.2.1	Tomato	nucleus	25.98	14.6
AT4G17880.1	Thale cress	nucleus	33.86	14.6
AT1G32640.1	Thale cress	nucleus	35.04	14.29
KRH75613	Soybean	nucleus	35.43	14.13
KRH74418	Soybean	nucleus	35.43	14.02
KRH45440	Soybean	nucleus	35.83	13.91
VIT_02s0012g01320.t01	Wine grape	nucleus	36.22	13.88
Zm00001d030232_P001	Maize	nucleus	17.32	13.75
Zm00001d024781_P001	Maize	nucleus	18.11	13.03
Bra024993.1-P	Field mustard	nucleus	19.29	13.0
Solyc08g076930.1.1	Tomato	nucleus	34.65	12.77
Zm00001d033412_P001	Maize	nucleus	18.5	12.74
Zm00001d025462_P001	Maize	nucleus	16.54	12.73
PGSC0003DMT400045204	Potato	nucleus	34.65	12.68
Zm00001d047017_P001	Maize	nucleus	35.04	12.66
Zm00001d030028_P001	Maize	nucleus	35.04	12.62
Zm00001d013370_P001	Maize	plastid	18.5	12.6
Zm00001d003604_P001	Maize	nucleus	16.54	12.5
KRH39540	Soybean	nucleus	35.43	12.31
Zm00001d033848_P004	Maize	nucleus	17.32	12.09
Zm00001d033407_P001	Maize	nucleus	16.93	12.08
Zm00001d031167_P002	Maize	nucleus	18.5	11.96
Zm00001d028315_P001	Maize	cytosol	6.3	11.85
Zm00001d028312_P001	Maize	nucleus	14.17	11.25
Zm00001d028314_P001	Maize	nucleus	8.27	11.23
Zm00001d009013_P001	Maize	nucleus	26.38	10.97
Zm00001d039271_P001	Maize	nucleus	26.38	10.88
Zm00001d000236_P001	Maize	nucleus, plastid	20.47	9.34
Zm00001d026147_P002	Maize	nucleus	21.65	8.93
Zm00001d019170_P001	Maize	nucleus	21.65	8.16
Zm00001d007536_P001	Maize	plastid	18.5	7.74
Bra013264.1-P	Field mustard	nucleus	5.51	4.71
CDY70012	Canola	nucleus	2.36	2.25

Protein Annotations

EntrezGene:100273284	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:B4FU91	EMBL:BT040679	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EMBL:KJ726787	ProteinID:ONM03551.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF68	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00017B7516	EnsemblPlantsGene:Zm00001d031717	EnsemblPlants:Zm00001d031717_P001
EnsemblPlants:Zm00001d031717_T001	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

bHLH-transcription factor 145Transcription factor bHLH28

Coordinates

chr1:-:199251192..199251956

Molecular Weight (calculated)

27323.4 Da

IEP (calculated)

5.971

GRAVY (calculated)

-0.300

Length

254 amino acids

Sequence
(BLAST)

001: MDELVCPAAS SCSSPSPTSF FAAGHVPELE FVSWDVPEEW MEGTDWFDEP LDGDEGSRSA GNDLSGEPPA PAPKRRRGRK PGPRTNGPTL SHVEAERQRR
101: DKLNRRFCEL RAAVPTVSRM DKASLLADAA TYIGELRDRV EQLEAEAKQA SAAVTTAVAA ASHSFAPLQE KLGLEVRMVA GLDAAALRLT TSAARHAPAH
201: LMLALRSLDL QVQHACVCRV GGVTVQDAIV DVPAGLRDER CLRAALLQRL QPSG

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.