Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028314_P001 | Maize | nucleus | 55.0 | 94.12 |
| Zm00001d028315_P001 | Maize | cytosol | 37.81 | 89.63 |
| KXG39824 | Sorghum | nucleus | 79.38 | 77.91 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 54.38 | 57.81 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 56.25 | 55.9 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 54.06 | 54.75 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 50.31 | 53.85 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 55.0 | 53.01 |
| Os03t0229100-00 | Rice | plastid | 47.19 | 52.8 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 49.69 | 51.13 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 48.75 | 50.16 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 38.12 | 49.59 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 48.75 | 48.6 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 34.38 | 44.9 |
| Zm00001d030232_P001 | Maize | nucleus | 28.75 | 28.75 |
| Zm00001d026009_P001 | Maize | plastid | 18.12 | 28.43 |
| Zm00001d038966_P001 | Maize | plastid | 18.12 | 28.43 |
| Zm00001d033848_P004 | Maize | nucleus | 27.81 | 24.45 |
| Zm00001d013370_P001 | Maize | plastid | 27.5 | 23.59 |
| Zm00001d033413_P001 | Maize | nucleus | 22.81 | 22.96 |
| Zm00001d003604_P001 | Maize | nucleus | 23.44 | 22.32 |
| Zm00001d033412_P001 | Maize | nucleus | 24.69 | 21.41 |
| Zm00001d033407_P001 | Maize | nucleus | 23.44 | 21.07 |
| Zm00001d025462_P001 | Maize | nucleus | 19.69 | 19.09 |
| Zm00001d031167_P002 | Maize | nucleus | 22.81 | 18.58 |
| Zm00001d024781_P001 | Maize | nucleus | 19.06 | 17.28 |
| Zm00001d052728_P001 | Maize | nucleus | 12.81 | 14.91 |
| Zm00001d031717_P001 | Maize | nucleus | 11.25 | 14.17 |
| Zm00001d006150_P001 | Maize | nucleus | 12.5 | 13.75 |
| Zm00001d021164_P001 | Maize | nucleus | 12.19 | 13.45 |
| Zm00001d043706_P001 | Maize | nucleus | 14.06 | 9.64 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 16.25 | 9.34 |
| Zm00001d026147_P002 | Maize | nucleus | 16.88 | 8.77 |
| Zm00001d039271_P001 | Maize | nucleus | 16.56 | 8.6 |
| Zm00001d009013_P001 | Maize | nucleus | 16.25 | 8.51 |
| Zm00001d047017_P001 | Maize | nucleus | 17.81 | 8.11 |
| Zm00001d019170_P001 | Maize | nucleus | 16.88 | 8.01 |
| Zm00001d030028_P001 | Maize | nucleus | 17.5 | 7.94 |
| Zm00001d007536_P001 | Maize | plastid | 9.38 | 4.94 |
Protein Annotations
| EnsemblPlants:Zm00001d028312_P001 | EnsemblPlants:Zm00001d028312_T001 | EnsemblPlantsGene:Zm00001d028312 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF35 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:ONL95406.1 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000843BC5F | UniProt:A0A1D6JUB0 | MapMan:15.5.32 | : |
Description
Transcription factor bHLH18
Coordinates
chr1:+:30246573..30253035
Molecular Weight (calculated)
35876.4 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.593
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MDELNKWRHL HPDPEDELAY MYRQQEEDHA GMQQQHHHFA ERLPEQQQYY TPPPPAAAPP TSSSPFLPRL HHTSSFPGFG DPAVPPRLPF RPAKEEPGQP
101: SSLSNRILSF GGQPPSTLNF SGSDWTEAGV EAVQQMPPER RSRMHWNTQE HVIAERKRRE KMQQQFVTLA TIVPDLTKVL NWKLGIADGK DKISLLGSTI
201: EYVKHLEEKV KALEGRRERR TYEPTDFESK CHISTDIDAS SSSGSAFGAG GFNPTVDASI HGDTVLLKIC CKERRGVLVM IISEIENQGL AIINTSVLPF
301: TDSCLNITIT AKAMHSLSHV
101: SSLSNRILSF GGQPPSTLNF SGSDWTEAGV EAVQQMPPER RSRMHWNTQE HVIAERKRRE KMQQQFVTLA TIVPDLTKVL NWKLGIADGK DKISLLGSTI
201: EYVKHLEEKV KALEGRRERR TYEPTDFESK CHISTDIDAS SSSGSAFGAG GFNPTVDASI HGDTVLLKIC CKERRGVLVM IISEIENQGL AIINTSVLPF
301: TDSCLNITIT AKAMHSLSHV
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.