Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G234700.1 | Wheat | nucleus | 87.05 | 96.01 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 87.35 | 90.06 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 71.39 | 79.26 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 68.98 | 73.63 |
| KXG39824 | Sorghum | nucleus | 59.04 | 60.12 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 43.98 | 59.59 |
| Os03t0229100-00 | Rice | plastid | 49.4 | 57.34 |
| Zm00001d028312_P001 | Maize | nucleus | 53.01 | 55.0 |
| HORVU4Hr1G065640.6 | Barley | nucleus | 51.2 | 49.85 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 25.6 | 26.15 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 24.7 | 25.71 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 28.92 | 25.46 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 26.51 | 24.51 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 26.2 | 23.64 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 21.69 | 22.64 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 26.2 | 22.14 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 17.77 | 21.85 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 21.08 | 21.81 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 25.0 | 21.61 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 10.54 | 17.68 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 14.16 | 17.15 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 13.86 | 16.73 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 12.65 | 16.41 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 10.84 | 16.14 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 13.55 | 16.13 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 12.95 | 15.3 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 15.36 | 11.11 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 19.88 | 10.54 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 17.47 | 10.39 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 17.47 | 10.18 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 17.47 | 9.91 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 16.87 | 9.86 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 18.98 | 9.09 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 14.76 | 7.95 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 13.55 | 7.54 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G059100.1 | EnsemblPlantsGene:TraesCS4A01G059100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF11 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:54404629..54405867
Molecular Weight (calculated)
36099.5 Da
IEP (calculated)
7.253
GRAVY (calculated)
-0.467
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQQEGVPVP GMEQQFAEPP LPGHQEQYYT PPMATPSFHP SRSSDFPSFG GSSSLPNLPF GSTTVKNELG QPSPPPPSSN FLSFGAGQAG TLNFSGGAWQ
101: HDGVEGTMQL QAPERRSRAP ANAQEHVIAE RKRREKLQQQ FVSLATIVPG LRKVRDKETW LHSRGHHTNC PRRAPLVTLR HCFQTDKISL LGSTIDYVKQ
201: LEDKVRALEE QGSRRSSEST TVFESKCRIS AADNDAAGPS GSGDAAEDSS PAVEASIRGH TALLKICCKE RRGVLVMVLS ELENQGLSII NTNVVPFTDS
301: CLNITITAKI EEGFSSAAEL VRNLTVALRS FS
101: HDGVEGTMQL QAPERRSRAP ANAQEHVIAE RKRREKLQQQ FVSLATIVPG LRKVRDKETW LHSRGHHTNC PRRAPLVTLR HCFQTDKISL LGSTIDYVKQ
201: LEDKVRALEE QGSRRSSEST TVFESKCRIS AADNDAAGPS GSGDAAEDSS PAVEASIRGH TALLKICCKE RRGVLVMVLS ELENQGLSII NTNVVPFTDS
301: CLNITITAKI EEGFSSAAEL VRNLTVALRS FS
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.