Factsheet for TraesCS2A01G409400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G406900.1	Wheat	nucleus	89.08	89.24
TraesCS2A01G409600.2	Wheat	nucleus, plastid	86.8	88.35
TraesCS2B01G428000.1	Wheat	nucleus	87.15	86.39
TraesCSU01G228400.1	Wheat	nucleus	54.4	84.2
TraesCSU01G237100.1	Wheat	nucleus	54.23	83.92
HORVU2Hr1G096810.5	Barley	nucleus	82.57	83.6
TraesCS5A01G489500.1	Wheat	nucleus	63.91	63.68
TraesCS5A01G558500.1	Wheat	nucleus	64.08	62.22
OQU81560	Sorghum	nucleus	57.75	55.69
OQU82120	Sorghum	nucleus	57.39	55.44
OQU82117	Sorghum	nucleus	57.04	54.92
Zm00001d000236_P001	Maize	nucleus, plastid	52.99	54.04
Zm00001d026147_P002	Maize	nucleus	57.22	52.76
Os01t0577300-00	Rice	cytosol	10.56	49.18
GSMUA_Achr11P...	Banana	nucleus	37.32	45.01
OQU82119	Sorghum	nucleus	43.13	44.87
Os01t0576100-00	Rice	nucleus	22.54	40.76
GSMUA_Achr8P11430_001	Banana	nucleus	39.08	40.66
GSMUA_Achr11P...	Banana	nucleus	37.15	38.22
GSMUA_Achr5P20600_001	Banana	nucleus	36.97	35.71
GSMUA_Achr11P...	Banana	nucleus	37.15	35.58
VIT_02s0025g03450.t01	Wine grape	nucleus	38.56	34.87
AT1G63650.1	Thale cress	nucleus	35.04	33.39
VIT_15s0046g02560.t01	Wine grape	nucleus	38.2	32.93
Solyc08g081140.2.1	Tomato	nucleus	36.09	32.75
Bra025508.1-P	Field mustard	nucleus	35.56	32.11
Bra027796.1-P	Field mustard	nucleus	33.8	31.68
KRH41187	Soybean	nucleus	35.04	31.59
Bra027653.1-P	Field mustard	nucleus	33.1	31.54
KRH59908	Soybean	nucleus	34.33	30.9
AT5G41315.2	Thale cress	nucleus	34.68	30.54
KRH65046	Soybean	nucleus	34.33	30.14
KRH48144	Soybean	nucleus	33.98	29.69
AT4G00480.2	Thale cress	nucleus	28.35	27.76
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	28.35	25.72
CDX77694	Canola	nucleus	11.44	25.69
PGSC0003DMT400032140	Potato	nucleus	15.67	24.72
Bra000970.1-P	Field mustard	nucleus	27.99	24.31
TraesCS3A01G252900.1	Wheat	nucleus	19.19	23.75
Bra037343.1-P	Field mustard	cytosol	26.06	20.82
TraesCS1A01G369200.1	Wheat	nucleus	7.04	20.2
TraesCS2A01G448500.1	Wheat	nucleus	8.8	19.53
TraesCS4A01G028900.1	Wheat	nucleus	20.25	19.26
TraesCS5A01G505100.1	Wheat	nucleus	10.04	19.06
TraesCS5A01G306600.1	Wheat	nucleus	9.15	18.91
TraesCS5A01G306700.1	Wheat	peroxisome	8.8	18.25
TraesCS3A01G158600.1	Wheat	nucleus	19.72	18.18
TraesCS5A01G555200.1	Wheat	nucleus	9.33	17.04
TraesCS1A01G193200.1	Wheat	nucleus	20.6	16.88
TraesCS4A01G059100.1	Wheat	nucleus	9.86	16.87
TraesCS5A01G306200.1	Wheat	nucleus	8.27	16.85
TraesCS7A01G558700.1	Wheat	nucleus	9.15	16.2
TraesCS5A01G306500.1	Wheat	nucleus	7.92	16.01
TraesCS4A01G354100.1	Wheat	nucleus	9.15	16.0
TraesCS5A01G555300.1	Wheat	nucleus	6.87	15.92
TraesCS5A01G306400.1	Wheat	nucleus	6.16	15.7
TraesCS4A01G292700.1	Wheat	nucleus	9.68	15.32
TraesCS4A01G257900.2	Wheat	nucleus	9.86	14.85
TraesCS5A01G014800.1	Wheat	nucleus	10.21	14.76
TraesCS3A01G019000.1	Wheat	nucleus	8.1	14.42
TraesCS4A01G408700.1	Wheat	nucleus	6.69	14.07
TraesCS4A01G292800.1	Wheat	nucleus	8.98	13.86
TraesCS3A01G019100.1	Wheat	nucleus	7.75	13.84
TraesCS4A01G408800.1	Wheat	nucleus	8.63	12.76

Protein Annotations

EnsemblPlants:TraesCS2A01G409400.1	EnsemblPlantsGene:TraesCS2A01G409400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr2A:+:667011017..667015600

Molecular Weight (calculated)

62654.6 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.296

Length

568 amino acids

Sequence
(BLAST)

001: MALPVVRPCQ EEPTLPPPTG TQFSNQLAAA VRSINWSYAI FWSISTSRPG VLTWKDGFYN GEIKTRKVTS SADITADQLV LQRSEQLREL YESLLSGQCD
101: HRARRPAAAL SPEDLGDAEW YYTVCMGYAF RPGQGLPGRS FASNEHVWLC NAQCADTKTF QRALLAKTAS IQTVACIPLM GGVLELGTTN TVLEDKGMVN
201: WIGTSFWELK FPTCSKSEEP NSIPSVDDTG DADIVFDVLN HNTMAMMIPG ELELGEVECL SDDNLERITK EINRFYGLYD ELDVGALEEN WTMGGCFEIM
301: SSPEVPPAPA ATNGITNGAV TLSSVEPSRS SCFTAWKRSW DSAEDMATLV ARETQKLLKK ALAGGAWANN GGDDTARAQE STNTKNHVIS ERRRREKLNE
401: MFLILKSLVP SIHKVDKASI LAETITYLRE LEQKVEELGS NRAARTTAVR KRHEVGGKKV LARSKRKASE LGGDDTERVL PKDDGLSSVI NVTVTDNEVL
501: LEVQCRWKEL LMTQVFDAIK SLRLDVLSVR ASTPDDLLAL KIRAQFAGPG VVETGMISEA LQRAIRRP

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.