Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G019100.1 | Wheat | nucleus | 90.28 | 90.57 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 86.52 | 84.15 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 86.83 | 82.44 |
| HORVU3Hr1G002620.1 | Barley | plastid | 55.8 | 77.39 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 52.98 | 62.59 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 68.65 | 57.03 |
| Zm00001d038966_P001 | Maize | plastid | 30.41 | 47.55 |
| Zm00001d026009_P001 | Maize | plastid | 30.09 | 47.06 |
| EES10849 | Sorghum | nucleus | 48.59 | 44.93 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 51.1 | 44.29 |
| Zm00001d003604_P001 | Maize | nucleus | 44.83 | 42.56 |
| KXG37866 | Sorghum | nucleus | 48.59 | 41.78 |
| Zm00001d025462_P001 | Maize | nucleus | 42.32 | 40.91 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 40.75 | 40.0 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 43.89 | 39.0 |
| Zm00001d033413_P001 | Maize | nucleus | 38.56 | 38.68 |
| Zm00001d033412_P001 | Maize | nucleus | 43.89 | 37.94 |
| EER93685 | Sorghum | mitochondrion | 43.89 | 37.63 |
| Zm00001d024781_P001 | Maize | nucleus | 38.24 | 34.56 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 34.48 | 34.27 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 40.44 | 32.82 |
| OQU77369 | Sorghum | nucleus | 42.01 | 31.9 |
| OQU75589 | Sorghum | nucleus | 37.62 | 31.17 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 25.71 | 27.42 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 32.29 | 27.32 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 25.08 | 25.72 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 25.71 | 24.7 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 14.42 | 18.78 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 14.42 | 17.97 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 15.36 | 17.56 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 12.23 | 17.49 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 14.73 | 17.15 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 14.42 | 16.73 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 14.73 | 16.73 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 10.34 | 16.67 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 15.36 | 10.68 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 20.69 | 9.52 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 17.55 | 9.09 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 16.3 | 8.71 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 16.3 | 8.31 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 14.73 | 8.25 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 14.42 | 8.1 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 14.11 | 8.06 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 14.73 | 8.03 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G019000.1 | EnsemblPlantsGene:TraesCS3A01G019000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr3A:-:11675227..11677457
Molecular Weight (calculated)
34579.2 Da
IEP (calculated)
8.716
GRAVY (calculated)
-0.342
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSLMFMQW AVSTLQHEED QGGADENRAG FACLQALPEL PEAHKRQSSG ADTRRCGGLI SPSPDAAMQQ GSNSTLTSFP ASGSMSSTGA TYTHSMSWNF
101: NAAQPSSVGG GTQAARAPLR SGVSQPTRRA VARKVAACAQ GHIMAERKRR EKTNQRFIEL SALIPGLKKM DKGTILSNAT SYVKELQEKV KSLEAAGGSH
201: RSVETVVLVK EGSPLFYSAD RTAASSQLLP EIEAKLSGNK VMLRIHCEIN GKGLVARVLA ELEEFHLRVV HNNVMPFTQS TVIITTMAKV EEGFTVNAEE
301: IVRRLNYVLY QDSGNKSCY
101: NAAQPSSVGG GTQAARAPLR SGVSQPTRRA VARKVAACAQ GHIMAERKRR EKTNQRFIEL SALIPGLKKM DKGTILSNAT SYVKELQEKV KSLEAAGGSH
201: RSVETVVLVK EGSPLFYSAD RTAASSQLLP EIEAKLSGNK VMLRIHCEIN GKGLVARVLA ELEEFHLRVV HNNVMPFTQS TVIITTMAKV EEGFTVNAEE
301: IVRRLNYVLY QDSGNKSCY
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.