Factsheet for HORVU3Hr1G002620.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G019100.1	Wheat	nucleus	78.26	56.6
TraesCS3A01G019000.1	Wheat	nucleus	77.39	55.8
TraesCS3D01G014900.1	Wheat	nucleus	80.87	55.36
TraesCS3B01G029800.1	Wheat	nucleus	76.96	53.96
Zm00001d038966_P001	Maize	plastid	41.3	46.57
Zm00001d026009_P001	Maize	plastid	41.3	46.57
HORVU4Hr1G078880.2	Barley	nucleus	65.65	41.37
HORVU4Hr1G078910.2	Barley	nucleus	66.52	41.24
Zm00001d033413_P001	Maize	nucleus	46.96	33.96
Zm00001d003604_P001	Maize	nucleus	49.57	33.93
EES10849	Sorghum	nucleus	50.43	33.62
HORVU4Hr1G003210.1	Barley	nucleus	52.61	33.15
KXG37866	Sorghum	nucleus	53.04	32.88
Zm00001d033412_P001	Maize	nucleus	50.87	31.71
Zm00001d025462_P001	Maize	nucleus	44.78	31.21
EER93685	Sorghum	mitochondrion	47.39	29.3
HORVU0Hr1G014300.1	Barley	nucleus	41.3	28.79
Zm00001d024781_P001	Maize	nucleus	41.74	27.2
HORVU4Hr1G009440.2	Barley	nucleus	38.7	26.1
HORVU5Hr1G002090.11	Barley	nucleus	42.61	25.65
OQU75589	Sorghum	nucleus	42.61	25.45
HORVU4Hr1G003340.3	Barley	nucleus	49.13	24.41
OQU77369	Sorghum	nucleus	43.48	23.81
HORVU7Hr1G120420.2	Barley	nucleus	33.48	19.95
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	13.04	18.29
HORVU5Hr1G080080.1	Barley	nucleus, plastid	16.52	18.1
HORVU5Hr1G080040.1	Barley	nucleus	19.57	16.79
HORVU5Hr1G079900.1	Barley	cytosol	17.83	15.19
HORVU4Hr1G065640.6	Barley	nucleus	16.09	10.85
HORVU1Hr1G050560.1	Barley	nucleus	24.78	8.33
HORVU3Hr1G066390.1	Barley	nucleus	16.52	8.17
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	17.83	8.06
HORVU2Hr1G096810.5	Barley	nucleus	16.09	6.6
HORVU3Hr1G057280.2	Barley	nucleus	20.87	6.26

Protein Annotations

EnsemblPlants:HORVU3Hr1G002620.1	EnsemblPlantsGene:HORVU3Hr1G002620	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000B4682B7	UniProt:A0A287JXP8	MapMan:15.5.32	MapMan:25.4.1.7	:

Description

No Description!

Coordinates

chrchr3H:-:6770790..6771888

Molecular Weight (calculated)

25513.7 Da

IEP (calculated)

10.112

GRAVY (calculated)

-0.462

Length

230 amino acids

Sequence
(BLAST)

001: MSSTGATNTQ SMSWNFDAAQ PSSDGGGTRA TRAPLRCSGA GVSQPTRRAA ARKLAACAQD HIMAERKRRE KTNQRFIELS AVIPGLKKMD KGTILTNATS
101: YVKELQEKVK SLEEAGRNHR SVETMVLVRE PSRHAAQNCD EGSRLFYATD RTPARSQLLP EIEAKLSGNK VMLSIHCEIN GKGLVARVLV ELEELHLCIV
201: HNNVMPFTES TVIITTMAKI TDRYTTWKWK

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.