Factsheet for HORVU1Hr1G020370.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 5
plastid 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G006810.2
HORVU0Hr1G016450.1
HORVU1Hr1G020370.2
HORVU3Hr1G004310.1
HORVU5Hr1G022710.1
HORVU5Hr1G083910.2
HORVU7Hr1G057410.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	HORVU3Hr1G004310.1	AT1G71030.1	15361138
AT4G09820.1	HORVU5Hr1G022710.1	AT2G47190.1	18532977
AT4G09820.1	HORVU0Hr1G006810.2	AT3G13540.1	15361138
AT4G09820.1	HORVU1Hr1G020370.2	AT4G09820.1	18532977
AT4G09820.1	HORVU5Hr1G083910.2	AT4G38620.1	15361138
AT4G09820.1	HORVU7Hr1G057410.1	AT4G38620.1	15361138
AT4G09820.1	HORVU0Hr1G016450.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	78.78	64.06
TraesCS1B01G113100.4	Wheat	nucleus	83.1	61.48
TraesCS1B01G112900.1	Wheat	nucleus	75.44	60.86
TraesCS1D01G094200.1	Wheat	nucleus	64.44	51.98
OQU88697	Sorghum	nucleus	50.88	38.26
Zm00001d019170_P001	Maize	nucleus	43.42	32.79
GSMUA_Achr3P17620_001	Banana	nucleus	34.97	31.56
GSMUA_Achr6P21490_001	Banana	nucleus	39.29	30.72
PGSC0003DMT400033569	Potato	nucleus	33.79	29.15
VIT_07s0104g00090.t01	Wine grape	nucleus	39.69	29.02
KRH71432	Soybean	nucleus	37.13	28.94
AT4G09820.1	Thale cress	nucleus	29.27	28.76
KRH32008	Soybean	extracellular, plastid	37.13	28.46
CDX99505	Canola	nucleus	29.08	28.41
CDX86891	Canola	nucleus	29.08	28.41
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	30.45	27.1
Bra037887.1-P	Field mustard	nucleus	26.13	26.76
Solyc09g065100.1.1	Tomato	nucleus	34.58	25.88
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	29.67	25.68
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.23	22.38
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	6.88	21.34
HORVU2Hr1G096810.5	Barley	nucleus	22.0	19.96
HORVU5Hr1G080040.1	Barley	nucleus	10.22	19.4
HORVU5Hr1G079900.1	Barley	cytosol	10.02	18.89
HORVU3Hr1G002620.1	Barley	plastid	8.06	17.83
HORVU0Hr1G014300.1	Barley	nucleus	10.22	15.76
HORVU4Hr1G003210.1	Barley	nucleus	10.22	14.25
HORVU3Hr1G066390.1	Barley	nucleus	12.77	13.98
HORVU4Hr1G009440.2	Barley	nucleus	9.23	13.78
HORVU4Hr1G078880.2	Barley	nucleus	9.23	12.88
HORVU5Hr1G002090.11	Barley	nucleus	9.63	12.83
HORVU4Hr1G078910.2	Barley	nucleus	8.64	11.86
HORVU1Hr1G050560.1	Barley	nucleus	15.32	11.4
PGSC0003DMT400028054	Potato	cytosol	4.13	10.66
HORVU7Hr1G120420.2	Barley	nucleus	8.06	10.62
PGSC0003DMT400028052	Potato	nucleus	4.13	10.34
HORVU4Hr1G003340.3	Barley	nucleus	9.04	9.94
HORVU3Hr1G057280.2	Barley	nucleus	14.15	9.39
HORVU4Hr1G065640.6	Barley	nucleus	6.09	9.09

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU1Hr1G020370	EnsemblPlants:HORVU1Hr1G020370.2	InterPro:IPR011598	InterPro:IPR036638
UniProt:M0YG63	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296E5E9	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:79585386..79592522

Molecular Weight (calculated)

55979.0 Da

IEP (calculated)

5.243

GRAVY (calculated)

-0.371

Length

509 amino acids

Sequence
(BLAST)

001: MIMAKPTRIC AIHFFPSLSD DIFLFMWCTT NFGGFELQSA GIKTVLCIPI VDGVLEIGTT EKVEEDIGLV QYAMAIFMDQ QETHMIPSIC HSNQTSHIDQ
101: QSFQTQRKAH TGDLKPEPNK LNPAYEDDEM EYDDDDEIDA ECASVSETNA GRDYCRHGPP NIAVNADHAT HDAAGSSELM QVEMSERARD GCSSNLGDEI
201: QMLMVCQNGA NDEPWHFLYE ELCGGYPQSS AAGENQATAE NAHYAQTVSL ILHRNNALGQ ADGRSTGSYL AVSHQSSFSR WDATASIHGR TVTGGINRQK
301: MLKSVLLFFS AACNRPPGDL RCDEGGARRE VDFGASHVMQ ERKRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LTKRVQDLES SAARQQGSSE
401: KRAVLTGMEG ASSSSSGSSS STPVATDVQV SIIESDALLE LRCPDRRGLL VTIMQALQEQ LRLEVTSVQA SSDHGVLLAE MRAKVRELHG RRSSISQVKR
501: AIHLIISSG

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.