Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G021500.1 | Wheat | nucleus | 85.75 | 87.68 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 86.3 | 87.5 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 86.3 | 86.78 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 87.95 | 86.76 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 85.75 | 86.7 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 86.58 | 85.87 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 84.93 | 84.01 |
| Zm00001d038966_P001 | Maize | plastid | 32.6 | 58.33 |
| Zm00001d026009_P001 | Maize | plastid | 32.05 | 57.35 |
| KXG37866 | Sorghum | nucleus | 55.34 | 54.45 |
| HORVU3Hr1G002620.1 | Barley | plastid | 33.15 | 52.61 |
| EES10849 | Sorghum | nucleus | 49.32 | 52.17 |
| Zm00001d003604_P001 | Maize | nucleus | 45.48 | 49.4 |
| Zm00001d033413_P001 | Maize | nucleus | 42.74 | 49.06 |
| Zm00001d033412_P001 | Maize | nucleus | 48.77 | 48.24 |
| EER93685 | Sorghum | mitochondrion | 49.04 | 48.12 |
| Zm00001d025462_P001 | Maize | nucleus | 43.29 | 47.88 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 44.93 | 44.93 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 40.27 | 44.55 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 43.01 | 42.32 |
| Zm00001d024781_P001 | Maize | nucleus | 40.55 | 41.93 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 43.56 | 41.62 |
| OQU77369 | Sorghum | nucleus | 44.93 | 39.05 |
| OQU75589 | Sorghum | nucleus | 40.82 | 38.7 |
| HORVU4Hr1G003340.3 | Barley | nucleus | 44.93 | 35.42 |
| HORVU7Hr1G120420.2 | Barley | nucleus | 32.33 | 30.57 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 27.4 | 29.33 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 12.05 | 20.95 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 15.07 | 20.52 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 9.04 | 20.12 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 13.97 | 18.89 |
| HORVU4Hr1G065640.6 | Barley | nucleus | 13.15 | 14.08 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 14.79 | 11.61 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 19.18 | 10.23 |
| HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 14.25 | 10.22 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 15.07 | 9.8 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 15.34 | 7.3 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G003210.1 | EnsemblPlantsGene:HORVU4Hr1G003210 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B4799BD | UniProt:A0A287MYD0 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
No Description!
Coordinates
chrchr4H:+:6344489..6347609
Molecular Weight (calculated)
38873.9 Da
IEP (calculated)
5.462
GRAVY (calculated)
-0.292
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYSALFME WAMDTLEQEH PDPVVIVNGD CGEAAFPSLQ ALREQRLVLE ELITGTNPAS SGSSGETTDG SVGCGGNFSS PAAMEHDVWP PSPPTSARRA
101: PRLSMKAGGT SLPVTSWNFC AASALPASDD GTLDSGSAGP AVPEMVYGSQ PTRRAAARSP TGTGPVSSGP PYAQDHIMAE RKRREKINQR FIELSTVIPG
201: LKKMDKATIL SDATRHVKEL QEKIKALEAA TGRSSRSIET VVLVKKPRNA AVSDQNGSPS SASSGAPASR NRLPEIEVRF SENGVMVRIQ CDDVKGVVVR
301: VLSVVEQGLH LSVTHANVMP FTPCTVIITI TAKVDEGFTV TAEEIIGRLN YALEQHTSCT STEEK
101: PRLSMKAGGT SLPVTSWNFC AASALPASDD GTLDSGSAGP AVPEMVYGSQ PTRRAAARSP TGTGPVSSGP PYAQDHIMAE RKRREKINQR FIELSTVIPG
201: LKKMDKATIL SDATRHVKEL QEKIKALEAA TGRSSRSIET VVLVKKPRNA AVSDQNGSPS SASSGAPASR NRLPEIEVRF SENGVMVRIQ CDDVKGVVVR
301: VLSVVEQGLH LSVTHANVMP FTPCTVIITI TAKVDEGFTV TAEEIIGRLN YALEQHTSCT STEEK
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.