Factsheet for HORVU5Hr1G002090.11

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G020600.1	Wheat	nucleus	87.96	89.84
TraesCS5A01G014800.1	Wheat	nucleus	86.91	84.48
TraesCS5B01G013000.2	Wheat	nucleus	82.2	83.07
Os12t0632600-00	Rice	nucleus	53.14	57.67
Zm00001d031167_P002	Maize	nucleus	56.28	54.71
KXG24110	Sorghum	nucleus	55.76	53.52
HORVU4Hr1G003210.1	Barley	nucleus	41.62	43.56
HORVU3Hr1G002620.1	Barley	plastid	25.65	42.61
HORVU7Hr1G120420.2	Barley	nucleus	42.15	41.71
HORVU0Hr1G014300.1	Barley	nucleus	34.82	40.3
HORVU4Hr1G078880.2	Barley	nucleus	38.22	40.0
HORVU4Hr1G078910.2	Barley	nucleus	35.6	36.66
HORVU4Hr1G003340.3	Barley	nucleus	39.53	32.61
HORVU4Hr1G009440.2	Barley	nucleus	26.96	30.21
HORVU5Hr1G080080.1	Barley	nucleus, plastid	12.3	22.38
HORVU5Hr1G080040.1	Barley	nucleus	14.4	20.52
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	7.33	17.07
HORVU5Hr1G079900.1	Barley	cytosol	11.26	15.93
HORVU4Hr1G065640.6	Barley	nucleus	12.57	14.08
HORVU2Hr1G096810.5	Barley	nucleus	15.97	10.87
HORVU3Hr1G066390.1	Barley	nucleus	13.09	10.75
HORVU1Hr1G050560.1	Barley	nucleus	17.54	9.8
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	12.83	9.63
HORVU3Hr1G057280.2	Barley	nucleus	14.92	7.43

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EMBL:AK364345	ncoils:Coil	UniProt:F2DKC7
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU5Hr1G002090
EnsemblPlants:HORVU5Hr1G002090.11	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000200656E	InterPro:bHLH_dom	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKC7]

Coordinates

chrchr5H:+:6037091..6041491

Molecular Weight (calculated)

40145.7 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.421

Length

382 amino acids

Sequence
(BLAST)

001: MQGSVDMDDF MQWAMNTLDQ QQYHAAAAAP PAAAPYGGAG SSSGGSSAGA AAFPSLQALR ESTAAAGGGG GVRGLRVQVD HHHPPSSWST SSGDSPGAAM
101: DHDAPAAGWS PHAARARSRA TTSSSRPMSW NFSAAAQATQ LPADIDISPR PAAPRGHSTP AAGRRSGGGA ASSASPGPVQ DHIIAERRRR EKINQRFIEL
201: STVIPGLKKM DKATILGDAV KYVRELQEKV KTMEDDESAA AAATTTTTIR SAVLVSKKVK AAAVDDEDEE EDAGEESSHG GLPEIEVRVS GEKTVLVRIH
301: CKNARGLLVR VLAEVEELRL AITHTSVMPF PADTAIITIT AKVEEGFNST VEEIVRRLNS SLRQHYAANN SDDLNSATKR EC

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.