Factsheet for HORVU3Hr1G057280.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G031310.9
HORVU5Hr1G062290.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	HORVU2Hr1G031310.9	AT1G19180.1	21798944
AT1G01260.1	HORVU5Hr1G062290.6	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G158600.1	Wheat	nucleus	78.23	97.4
TraesCS3B01G185400.1	Wheat	nucleus	78.88	96.8
TraesCS3D01G166300.2	Wheat	nucleus	78.49	96.32
Zm00001d039271_P001	Maize	nucleus	66.36	82.63
Os01t0235700-01	Rice	nucleus	66.36	82.5
Zm00001d009013_P001	Maize	nucleus	64.67	81.18
EES19274	Sorghum	nucleus	47.72	62.35
GSMUA_Achr10P...	Banana	nucleus	35.46	59.26
GSMUA_Achr7P14640_001	Banana	nucleus	35.33	55.99
GSMUA_Achr1P28110_001	Banana	nucleus	32.33	49.9
GSMUA_Achr8P05350_001	Banana	nucleus	29.2	49.67
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	29.47	47.58
GSMUA_Achr8P26280_001	Banana	cytosol	28.55	47.3
VIT_15s0046g00320.t01	Wine grape	nucleus	36.77	46.69
KRH68922	Soybean	nucleus	33.25	46.36
CDY27319	Canola	nucleus	26.47	45.82
Solyc01g096050.2.1	Tomato	nucleus	35.98	45.62
PGSC0003DMT400000652	Potato	nucleus	35.46	45.48
GSMUA_Achr6P35730_001	Banana	nucleus	28.42	44.4
PGSC0003DMT400018046	Potato	extracellular, nucleus	33.25	44.12
CDY66312	Canola	nucleus	26.34	44.1
KRH06456	Soybean	nucleus	35.46	44.01
KRH47899	Soybean	nucleus	35.85	43.93
Bra039279.1-P	Field mustard	nucleus	26.21	43.79
Solyc05g050560.1.1	Tomato	nucleus	32.46	43.01
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	32.2	42.96
HORVU3Hr1G066390.1	Barley	nucleus	25.68	42.37
CDY56874	Canola	nucleus	26.73	41.75
KRG97199	Soybean	nucleus	33.64	41.68
Bra004532.1-P	Field mustard	nucleus	26.34	41.56
CDX80023	Canola	nucleus	26.34	41.48
CDX90021	Canola	nucleus	28.94	41.11
AT1G01260.1	Thale cress	nucleus	31.42	40.85
Bra033273.1-P	Field mustard	nucleus	30.25	39.73
AT2G46510.1	Thale cress	nucleus	28.55	38.69
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	7.43	34.76
HORVU5Hr1G080080.1	Barley	nucleus, plastid	7.95	29.05
HORVU5Hr1G080040.1	Barley	nucleus	9.78	27.99
HORVU1Hr1G050560.1	Barley	nucleus	23.08	25.88
HORVU5Hr1G079900.1	Barley	cytosol	8.21	23.33
HORVU3Hr1G002620.1	Barley	plastid	6.26	20.87
HORVU2Hr1G096810.5	Barley	nucleus	15.12	20.68
HORVU4Hr1G009440.2	Barley	nucleus	7.69	17.3
HORVU0Hr1G014300.1	Barley	nucleus	7.17	16.67
HORVU4Hr1G003210.1	Barley	nucleus	7.3	15.34
HORVU5Hr1G002090.11	Barley	nucleus	7.43	14.92
HORVU4Hr1G078910.2	Barley	nucleus	7.17	14.82
HORVU4Hr1G078880.2	Barley	nucleus	7.04	14.79
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	9.39	14.15
HORVU4Hr1G003340.3	Barley	nucleus	7.69	12.74
HORVU4Hr1G065640.6	Barley	nucleus	5.08	11.44
HORVU7Hr1G120420.2	Barley	nucleus	5.48	10.88

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A287L5R8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU3Hr1G057280	EnsemblPlants:HORVU3Hr1G057280.2	InterPro:IPR011598
InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000B467778	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:429734489..429738070

Molecular Weight (calculated)

83543.4 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.534

Length

767 amino acids

Sequence
(BLAST)

001: HTKASTLGSA RDPSRKGKEA ALLAHPHNLK PQLQQRVASP PPKSPRAPEK TTHHHRRIPP PAFPPSLRAR RAAPRAPRPA GPILPARKER EGERAEPRPR
101: SSGPRAGRSG LLAVAASAAE VVGWVLPALP ALDFASPLPI RARDPRSGLM VMKMEVEEDG ANGGNGGAWT EEDRALSTTV LGRDAFAYLT KGGGTISEGL
201: IAASSPVDLQ NKLQELIESE HPGAGWNYAI FWQLSRTKSG DLVLGWGDGS CREPNDAELA AAVSAGNEDA KQRMRKRVLQ RLHKAFGGAD EEDYAPTIGQ
301: VTDTEMFFLA SMYFAFPRRA GAPGQVFAAG VPLWVPNSER NVFPANYCYR GYLASTAGFR TILLVPFETG VLELGSMQQV AESSDTLQTI KSVFAGTSGN
401: KDIVPSREGN GHIERSPGLA KIFGKDLNLG RSSAGPVIGV SKVDERPWEQ RNAGGGSSLL PNVQKGLQNF TWSQARGLNS HQQKFGNGIL IVSNEANHCN
501: NGAADSSTTT QFQLQKAPQL QKLPLLQKPP QLVKPLQMVN QQQLQPQAPR QIDFSAGTSS KSGVLVTRAA VLDGDSSEVN GLCKEEGTTP VIEDRRPRKR
601: GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITDLQK KLKDMEMERE RFLESGMVDP RERHPRPEVD IQVVQDEVLV
701: RVMSPLENHP VKKVFEAFEE ADVRVGESKL TGNNGTVVHS FIIKCPGSEQ QTREKVIAAM SRAMSSV

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.