Factsheet for HORVU4Hr1G065640.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G335200.1	Wheat	nucleus	44.87	62.2
TraesCS4D01G235900.1	Wheat	nucleus	51.91	54.97
TraesCS4B01G234700.1	Wheat	nucleus	46.33	52.49
TraesCS4D01G330500.1	Wheat	nucleus	47.8	51.58
Zm00001d028314_P001	Maize	nucleus	28.15	51.34
TraesCS4A01G059100.1	Wheat	nucleus	49.85	51.2
TraesCS5A01G555300.1	Wheat	nucleus	33.14	46.12
TraesCS5A01G505100.1	Wheat	nucleus	40.18	45.82
TraesCS4B01G391500.1	Wheat	nucleus	42.52	45.17
TraesCS4B01G345800.1	Wheat	nucleus	41.06	45.02
TraesCS5A01G555200.1	Wheat	nucleus	40.18	44.05
KXG39824	Sorghum	nucleus	34.31	35.89
Os03t0229100-00	Rice	plastid	26.1	31.12
HORVU3Hr1G002620.1	Barley	plastid	10.85	16.09
HORVU4Hr1G009440.2	Barley	nucleus	15.25	15.25
Zm00001d028315_P001	Maize	cytosol	5.87	14.81
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	7.04	14.63
HORVU4Hr1G003210.1	Barley	nucleus	14.08	13.15
HORVU5Hr1G080080.1	Barley	nucleus, plastid	7.92	12.86
HORVU5Hr1G002090.11	Barley	nucleus	14.08	12.57
HORVU0Hr1G014300.1	Barley	nucleus	12.02	12.42
HORVU4Hr1G078910.2	Barley	nucleus	13.49	12.4
HORVU4Hr1G078880.2	Barley	nucleus	13.2	12.33
HORVU5Hr1G080040.1	Barley	nucleus	8.5	10.82
HORVU5Hr1G079900.1	Barley	cytosol	8.5	10.74
HORVU4Hr1G003340.3	Barley	nucleus	13.2	9.72
HORVU7Hr1G120420.2	Barley	nucleus	10.85	9.59
HORVU3Hr1G066390.1	Barley	nucleus	10.85	7.96
HORVU2Hr1G096810.5	Barley	nucleus	11.73	7.13
HORVU1Hr1G050560.1	Barley	nucleus	13.78	6.87
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	9.09	6.09
HORVU3Hr1G057280.2	Barley	nucleus	11.44	5.08

Protein Annotations

EnsemblPlants:HORVU4Hr1G065640.6	EnsemblPlantsGene:HORVU4Hr1G065640	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SEG:seg
SUPFAM:SSF47459	UniParc:UPI000B482FEC	UniProt:A0A287PEB5	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchr4H:+:547061002..547062603

Molecular Weight (calculated)

38042.8 Da

IEP (calculated)

10.906

GRAVY (calculated)

-0.887

Length

341 amino acids

Sequence
(BLAST)

001: MFNYQALLVW AVMEQPNQWL TQTEQEELAY MYQQEGVPVP GMDQQFAEPP LPGHQEQYYT SPMATPSFHT SRSSNFASFG GSSSLPNLPF GSATVKNELG
101: QPPSSNFLSF GAGQAGTLNF SGGAWQHDGV EGTMQLQAPE RRSRAPANAQ EHVIAERKRR EKLQQQFVSL ATIVPGLKKV RDKETWLHSC GHQLPAARLI
201: SYPSPLFSDG QDLSAGEHHR VREGAGRQGE GPGGARLAEV VGVHHRLREQ VPHIRRRQRR SRTQRIRGRR GVEPGRRGQH PGAHGAPENL LQGEERGAGD
301: GPLRAREPGP LHHKHQRRPV HRLLPQHHHH GQDRRGIFVR G

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.