Factsheet for HORVU0Hr1G025420.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G031310.9
HORVU2Hr1G112360.1
HORVU4Hr1G087520.3
HORVU5Hr1G060730.3
HORVU5Hr1G062290.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	HORVU2Hr1G031310.9	AT1G19180.1	18547396
AT1G32640.1	HORVU5Hr1G062290.6	AT1G19180.1	18547396
AT1G32640.1	HORVU4Hr1G087520.3	AT1G48500.1	19309455
AT1G32640.1	HORVU5Hr1G060730.3	AT1G48500.1	19309455
AT1G32640.1	HORVU4Hr1G087520.3	AT3G17860.1	17637675
AT1G32640.1	HORVU5Hr1G060730.3	AT3G17860.1	17637675
AT1G32640.1	HORVU2Hr1G112360.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G306400.1	Wheat	nucleus	65.24	47.98
TraesCS1A01G369200.1	Wheat	nucleus	55.49	45.96
HORVU5Hr1G080040.1	Barley	nucleus	62.2	38.06
Zm00001d006150_P001	Maize	nucleus	59.76	33.68
Zm00001d021164_P001	Maize	nucleus	59.15	33.45
EER99201	Sorghum	nucleus	59.76	33.11
HORVU5Hr1G079900.1	Barley	cytosol	50.61	30.74
HORVU5Hr1G080080.1	Barley	nucleus, plastid	37.8	29.52
Bra017527.1-P	Field mustard	nucleus	26.22	19.03
Bra013263.1-P	Field mustard	nucleus	25.61	15.5
CDY70013	Canola	nucleus	23.78	15.48
Bra024992.1-P	Field mustard	nucleus	23.78	14.39
VIT_02s0025g02610.t01	Wine grape	nucleus	29.27	13.3
KRH47834	Soybean	nucleus	37.2	13.15
HORVU3Hr1G002620.1	Barley	plastid	18.29	13.04
PGSC0003DMT400014089	Potato	nucleus	30.49	13.02
AT4G00870.1	Thale cress	nucleus, plastid	33.54	13.0
Solyc08g083170.1.1	Tomato	extracellular	30.49	12.92
KRH06400	Soybean	nucleus	36.59	12.88
PGSC0003DMT400028057	Potato	nucleus	30.49	12.85
Solyc10g009290.1.1	Tomato	nucleus	34.76	12.64
PGSC0003DMT400014097	Potato	nucleus	34.15	12.25
Solyc01g096370.2.1	Tomato	nucleus	33.54	12.22
Solyc10g009270.2.1	Tomato	nucleus	29.27	12.21
Bra024993.1-P	Field mustard	nucleus	28.05	12.2
PGSC0003DMT400047220	Potato	nucleus	33.54	12.17
PGSC0003DMT400031899	Potato	plastid	31.71	12.06
VIT_15s0048g02820.t01	Wine grape	nucleus	35.98	11.87
PGSC0003DMT400015017	Potato	nucleus	31.71	11.4
Solyc08g008600.2.1	Tomato	nucleus	31.1	11.28
AT5G46760.1	Thale cress	nucleus	39.63	10.98
AT5G46830.1	Thale cress	nucleus	34.15	10.96
AT4G17880.1	Thale cress	nucleus	39.02	10.87
Bra024998.1-P	Field mustard	nucleus	38.41	10.86
Bra017520.1-P	Field mustard	nucleus	32.93	10.84
Bra017523.1-P	Field mustard	nucleus	32.93	10.65
HORVU3Hr1G066390.1	Barley	nucleus	29.88	10.54
Bra010178.1-P	Field mustard	nucleus	36.59	10.0
HORVU4Hr1G009440.2	Barley	nucleus	20.73	9.97
VIT_02s0012g01320.t01	Wine grape	nucleus	40.24	9.95
PGSC0003DMT400002963	Potato	nucleus	35.98	9.87
AT1G32640.1	Thale cress	nucleus	37.2	9.79
KRH75613	Soybean	nucleus	37.8	9.73
KRH45440	Soybean	nucleus	38.41	9.63
KRH74418	Soybean	nucleus	37.2	9.5
HORVU4Hr1G078910.2	Barley	nucleus	21.34	9.43
HORVU4Hr1G078880.2	Barley	nucleus	20.73	9.32
HORVU0Hr1G014300.1	Barley	nucleus	18.29	9.09
HORVU1Hr1G050560.1	Barley	nucleus	37.8	9.06
HORVU4Hr1G003210.1	Barley	nucleus	20.12	9.04
Solyc08g076930.1.1	Tomato	nucleus	36.59	8.71
PGSC0003DMT400045204	Potato	nucleus	36.59	8.65
KRH39540	Soybean	nucleus	37.2	8.34
Bra013264.1-P	Field mustard	nucleus	14.63	8.08
Solyc08g005050.2.1	Tomato	nucleus	21.95	7.76
HORVU3Hr1G057280.2	Barley	nucleus	34.76	7.43
HORVU4Hr1G003340.3	Barley	nucleus	20.73	7.34
HORVU5Hr1G002090.11	Barley	nucleus	17.07	7.33
HORVU4Hr1G065640.6	Barley	nucleus	14.63	7.04
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	21.34	6.88
HORVU7Hr1G120420.2	Barley	nucleus	15.24	6.48
HORVU2Hr1G096810.5	Barley	nucleus	21.34	6.24
CDY70012	Canola	nucleus	6.71	4.12

Protein Annotations

EnsemblPlants:HORVU0Hr1G025420.1	EnsemblPlantsGene:HORVU0Hr1G025420	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000B461EAE	UniProt:A0A287E900	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchrUn:+:130022316..130022807

Molecular Weight (calculated)

18312.6 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.495

Length

164 amino acids

Sequence
(BLAST)

001: DDELINPCSS FPVCPPSCQF STVEVEHHNQ FIEFASCEVP EQWLLSDVVV PAKSDDAGRL WPELSLLSTV SDFSELPTVS LPASTKPQPA AKRQGRKSGT
101: RSQRPNVSHV EAERKRRHKL NRRFCDLRAA VPNVSRMDKA SLLADAVTCI AELRSRLSRL EDES

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.