Factsheet for VIT_02s0012g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00110.t01
VIT_10s0003g03790.t01
VIT_10s0003g03800.t01
VIT_10s0003g03810.t01
VIT_11s0016g00710.t01
VIT_17s0000g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	VIT_11s0016g00710.t01	AT1G19180.1	18547396
AT1G32640.1	VIT_04s0008g00110.t01	AT1G30135.1	19309455
AT1G32640.1	VIT_10s0003g03790.t01	AT1G30135.1	19309455
AT1G32640.1	VIT_10s0003g03800.t01	AT1G30135.1	19309455
AT1G32640.1	VIT_10s0003g03810.t01	AT1G30135.1	19309455
AT1G32640.1	VIT_17s0000g02230.t01	AT1G48500.1	19309455
AT1G32640.1	VIT_17s0000g02230.t01	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017527.1-P	Field mustard	nucleus	23.83	69.91
Solyc08g005050.2.1	Tomato	nucleus	48.72	69.61
PGSC0003DMT400002963	Potato	nucleus	61.69	68.39
KRH75613	Soybean	nucleus	64.71	67.35
Solyc08g076930.1.1	Tomato	nucleus	69.68	67.05
Bra013263.1-P	Field mustard	nucleus	26.7	65.31
PGSC0003DMT400045204	Potato	nucleus	68.33	65.27
CDX77688	Canola	nucleus	44.49	65.27
CDY58502	Canola	nucleus	44.19	65.26
KRH45440	Soybean	nucleus	63.5	64.37
KRH74418	Soybean	nucleus	61.84	63.86
CDX73261	Canola	nucleus	42.38	63.43
CDY26910	Canola	nucleus	42.23	63.21
CDY03195	Canola	nucleus	50.68	61.65
AT4G17880.1	Thale cress	nucleus	54.3	61.12
Bra010178.1-P	Field mustard	nucleus	55.05	60.83
AT1G32640.1	Thale cress	nucleus	56.56	60.19
CDY35179	Canola	nucleus	50.38	59.43
Bra024998.1-P	Field mustard	nucleus	51.58	58.97
CDX84081	Canola	nucleus	46.91	58.79
CDX78808	Canola	nucleus	51.13	58.55
CDY44507	Canola	nucleus	51.73	58.53
KRH39540	Soybean	nucleus	64.25	58.28
AT5G46760.1	Thale cress	nucleus	51.13	57.26
Bra013264.1-P	Field mustard	nucleus	23.98	53.54
HORVU1Hr1G050560.1	Barley	nucleus	55.2	53.51
TraesCS1B01G208000.1	Wheat	nucleus	55.66	53.25
Zm00001d030028_P001	Maize	nucleus	56.41	53.05
TraesCS1D01G196900.1	Wheat	nucleus	55.51	52.95
Os10t0575000-01	Rice	nucleus	55.66	52.79
Zm00001d047017_P001	Maize	nucleus	55.35	52.2
KXG39194	Sorghum	nucleus	55.51	52.05
TraesCS1A01G193200.1	Wheat	nucleus	53.54	51.23
CDY03185	Canola	nucleus	35.9	50.32
CDY59973	Canola	nucleus	38.16	49.71
Bra017520.1-P	Field mustard	nucleus	37.25	49.6
CDY35183	Canola	nucleus	37.56	49.11
CDY03183	Canola	nucleus	37.56	48.92
Bra017523.1-P	Field mustard	nucleus	37.25	48.72
AT5G46830.1	Thale cress	nucleus	36.65	47.55
CDX77696	Canola	nucleus	8.3	45.83
Bra024992.1-P	Field mustard	nucleus	18.7	45.76
CDX77699	Canola	nucleus	18.7	45.76
CDY33482	Canola	nucleus	18.55	45.39
Bra024993.1-P	Field mustard	nucleus	25.34	44.56
VIT_02s0025g02610.t01	Wine grape	nucleus	23.08	42.38
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	9.95	40.24
VIT_15s0048g02820.t01	Wine grape	nucleus	28.96	38.63
TraesCS5A01G306500.1	Wheat	nucleus	15.54	36.65
TraesCS1D01G374800.1	Wheat	nucleus	14.63	36.6
TraesCS2B01G469200.1	Wheat	nucleus	13.57	36.59
TraesCSU01G222600.1	Wheat	nucleus	13.57	36.59
TraesCS5D01G313500.1	Wheat	nucleus	15.38	36.56
TraesCS5D01G313600.1	Wheat	nucleus	15.38	36.56
Zm00001d031717_P001	Maize	nucleus	13.88	36.22
TraesCS5A01G306200.1	Wheat	nucleus	15.23	36.2
TraesCS5B01G307000.1	Wheat	nucleus	15.23	36.2
KXG25462	Sorghum	nucleus	15.08	35.97
TraesCS2B01G469300.1	Wheat	nucleus	13.88	35.94
TraesCS5A01G306400.1	Wheat	nucleus	12.07	35.87
TraesCS1A01G369200.1	Wheat	nucleus	10.71	35.86
TraesCS1B01G387900.1	Wheat	nucleus	12.82	35.56
OQU86344	Sorghum	nucleus	13.73	35.55
TraesCS2A01G448500.1	Wheat	nucleus	13.73	35.55
TraesCS7D01G102200.1	Wheat	nucleus	13.73	35.55
Zm00001d052728_P001	Maize	nucleus	14.48	34.91
Os09t0519100-00	Rice	nucleus	13.88	34.85
TraesCS5B01G306800.1	Wheat	nucleus	14.63	34.64
OQU75588	Sorghum	nucleus	13.73	34.6
OQU80776	Sorghum	nucleus	13.73	34.6
TraesCS5B01G306600.1	Wheat	nucleus	14.03	34.07
TraesCS5A01G306700.1	Wheat	peroxisome	14.03	33.94
EER97058	Sorghum	cytosol, nucleus, plastid	14.03	33.7
Zm00001d006150_P001	Maize	nucleus	14.78	33.68
HORVU5Hr1G080040.1	Barley	nucleus	13.57	33.58
TraesCS5D01G313700.1	Wheat	nucleus	13.88	33.45
TraesCS5D01G313400.1	Wheat	nucleus	13.73	33.33
TraesCS5A01G306600.1	Wheat	nucleus	13.73	33.09
OQU80778	Sorghum	nucleus	13.42	32.96
EER99201	Sorghum	nucleus	14.63	32.77
Zm00001d021164_P001	Maize	nucleus	14.33	32.76
TraesCS5B01G307100.1	Wheat	nucleus	13.42	32.6
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	13.42	31.9
HORVU5Hr1G079900.1	Barley	cytosol	12.97	31.85
VIT_07s0141g01060.t01	Wine grape	nucleus	23.53	31.77
VIT_15s0046g00320.t01	Wine grape	nucleus	28.81	31.62
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	12.37	31.18
VIT_00s0824g00020.t01	Wine grape	nucleus	7.99	30.99
VIT_07s0205g00160.t01	Wine grape	nucleus	8.6	30.65
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.65	30.48
OQU80777	Sorghum	nucleus	12.82	30.36
VIT_03s0088g01240.t01	Wine grape	nucleus	12.52	24.13
VIT_00s0927g00010.t01	Wine grape	nucleus	8.3	24.12
VIT_07s0205g00190.t01	Wine grape	nucleus	11.46	22.49
VIT_00s0384g00020.t01	Wine grape	nucleus	6.64	22.34
VIT_00s1314g00010.t01	Wine grape	nucleus	11.01	21.86
VIT_02s0025g03450.t01	Wine grape	nucleus	20.36	21.5
VIT_07s0205g00180.t01	Wine grape	nucleus	11.31	21.43
VIT_07s0104g00090.t01	Wine grape	nucleus	21.72	20.69
VIT_07s0205g00170.t01	Wine grape	cytosol	3.62	19.05
VIT_15s0046g02560.t01	Wine grape	nucleus	18.25	18.36

Protein Annotations

EntrezGene:100250607	wikigene:100250607	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB57900	ProteinID:CCB57900.1
ncoils:Coil	UniProt:F6HT90	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100250607	wikigene:LOC100250607
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43
SMART:SM00353	SUPFAM:SSF47459	TIGR:TC55555	UniParc:UPI0001982C18	ArrayExpress:VIT_02s0012g01320	EnsemblPlantsGene:VIT_02s0012g01320
EnsemblPlants:VIT_02s0012g01320.t01	unigene:Vvi.1929	RefSeq:XP_002280253	RefSeq:XP_002280253.1	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr2:-:7426524..7429017

Molecular Weight (calculated)

72778.8 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.599

Length

663 amino acids

Sequence
(BLAST)

001: MTEYRVPTMN LWTDDNASMM EAFISSDLSS FSWGPSSAAS TSTPAPDPSR NLAQSQPSMA VFNQETLQQR LQALIEGARE SWTYAIFWQS SVDFSGASLL
101: GWGDGYYKGE EDKGKRKMTP SSVSEQEHRK KVLRELNSLI SGTASSSDDA VDEEVTDTEW FFLVSMTQSF VNGAGLPGQA LFNSSPVWVV GTERLMSSPC
201: ERARQAQVFG LQTMVCIPSA NGVVELGSTE LIYQSSDLMN KVRVLFNFNN LEVGSWPIGA AAPDQGESDP SSLWISDPTS NVEIKDSVNA TATGASNPIG
301: NQQNSKSIQF ENPSSSSLTE NPSIMHNPQQ QQQIHTQGFF TRELNFSEFG FDGNNGRNGN LHSLKPESGE ILNFGDSKRS SCSANGNMFS GHSQVVAEEN
401: KKRRSPTSRG SAEEGMLSFT SGVILPSSCV VKSSGGGGDS DHSDLEASVV READSSRVVE PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL
501: RAVVPNVSKM DKASLLGDAI SYINELRTKL QSAESDKEDL QKEVNSMKKE LASKDSQYSG SSRPPPDQDL KMSNHHGSKL VEMDIDVKII GWDAMIRIQC
601: SKKNHPAAKL MGALKELDLD VNHASVSVVN DLMIQQATVK MGSRFYTQDQ LRLALSSKFA DSR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.