Factsheet for Bra017523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35183	Canola	nucleus	97.83	97.83
CDY03185	Canola	nucleus	88.56	94.93
Bra017520.1-P	Field mustard	nucleus	78.9	80.32
Bra024992.1-P	Field mustard	nucleus	30.18	56.46
Bra017527.1-P	Field mustard	nucleus	23.47	52.65
Bra024993.1-P	Field mustard	nucleus	38.86	52.25
Bra010178.1-P	Field mustard	nucleus	52.07	44.0
Bra013263.1-P	Field mustard	nucleus	22.09	41.33
Solyc08g005050.2.1	Tomato	nucleus	35.5	38.79
Bra024998.1-P	Field mustard	nucleus	43.59	38.1
KRH75613	Soybean	nucleus	47.53	37.83
VIT_02s0012g01320.t01	Wine grape	nucleus	48.72	37.25
PGSC0003DMT400002963	Potato	nucleus	43.59	36.96
KRH74418	Soybean	nucleus	46.35	36.6
KRH45440	Soybean	nucleus	46.94	36.39
Solyc08g076930.1.1	Tomato	nucleus	46.94	34.54
TraesCS1A01G369200.1	Wheat	nucleus	13.41	34.34
PGSC0003DMT400045204	Potato	nucleus	46.94	34.29
TraesCS2B01G469200.1	Wheat	nucleus	16.17	33.33
TraesCSU01G222600.1	Wheat	nucleus	16.17	33.33
TraesCS2A01G448500.1	Wheat	nucleus	16.77	33.2
Bra013264.1-P	Field mustard	nucleus	19.33	33.0
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	10.65	32.93
TraesCS2B01G469300.1	Wheat	nucleus	16.57	32.81
Zm00001d047017_P001	Maize	nucleus	45.17	32.57
KRH39540	Soybean	nucleus	46.94	32.56
Os10t0575000-01	Rice	nucleus	44.77	32.48
HORVU1Hr1G050560.1	Barley	nucleus	43.59	32.31
TraesCS1B01G208000.1	Wheat	nucleus	43.79	32.03
TraesCS7D01G102200.1	Wheat	nucleus	16.17	32.03
Zm00001d031717_P001	Maize	nucleus	15.98	31.89
TraesCS1D01G196900.1	Wheat	nucleus	43.59	31.8
Zm00001d030028_P001	Maize	nucleus	44.18	31.77
TraesCS1D01G374800.1	Wheat	nucleus	16.57	31.7
KXG39194	Sorghum	nucleus	44.18	31.68
TraesCS1A01G193200.1	Wheat	nucleus	42.6	31.17
HORVU5Hr1G080080.1	Barley	nucleus, plastid	12.62	30.48
Os09t0519100-00	Rice	nucleus	15.78	30.3
KXG25462	Sorghum	nucleus	16.57	30.22
OQU80776	Sorghum	nucleus	15.58	30.04
OQU75588	Sorghum	nucleus	15.58	30.04
TraesCS1B01G387900.1	Wheat	nucleus	14.0	29.71
Zm00001d052728_P001	Maize	nucleus	15.98	29.45
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	16.17	29.39
EER97058	Sorghum	cytosol, nucleus, plastid	15.98	29.35
HORVU5Hr1G080040.1	Barley	nucleus	15.38	29.1
TraesCS5B01G307100.1	Wheat	nucleus	15.58	28.94
TraesCS5A01G306700.1	Wheat	peroxisome	15.58	28.83
TraesCS5D01G313700.1	Wheat	nucleus	15.58	28.73
TraesCS5D01G313400.1	Wheat	nucleus	15.38	28.57
Bra039279.1-P	Field mustard	nucleus	25.84	28.54
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	14.79	28.52
EER99201	Sorghum	nucleus	16.57	28.38
TraesCS5A01G306600.1	Wheat	nucleus	15.38	28.36
TraesCS5A01G306200.1	Wheat	nucleus	15.58	28.32
TraesCS5A01G306400.1	Wheat	nucleus	12.43	28.25
TraesCS5B01G306600.1	Wheat	nucleus	15.19	28.21
OQU80778	Sorghum	nucleus	14.99	28.15
OQU86344	Sorghum	nucleus	14.2	28.12
TraesCS5A01G306500.1	Wheat	nucleus	15.58	28.11
TraesCS5D01G313600.1	Wheat	nucleus	15.38	27.96
TraesCS5D01G313500.1	Wheat	nucleus	15.38	27.96
TraesCS5B01G307000.1	Wheat	nucleus	15.38	27.96
Zm00001d021164_P001	Maize	nucleus	15.98	27.93
Zm00001d006150_P001	Maize	nucleus	15.98	27.84
OQU80777	Sorghum	nucleus	15.19	27.5
Bra004532.1-P	Field mustard	nucleus	26.23	27.37
TraesCS5B01G306800.1	Wheat	nucleus	14.79	26.79
HORVU5Hr1G079900.1	Barley	cytosol	13.81	25.93
Bra038458.1-P	Field mustard	nucleus	22.49	25.28
Bra012720.1-P	Field mustard	nucleus	22.49	25.0
Bra033273.1-P	Field mustard	nucleus	27.42	23.8
Bra013128.1-P	Field mustard	nucleus	10.45	19.85
Bra037887.1-P	Field mustard	nucleus	18.54	18.91
Bra011790.1-P	Field mustard	nucleus	12.23	18.45
Bra039924.1-P	Field mustard	nucleus	11.24	18.21
Bra030210.1-P	Field mustard	nucleus	11.44	18.01
Bra010617.1-P	Field mustard	nucleus	11.83	17.96
Bra027653.1-P	Field mustard	nucleus	20.12	17.11
Bra027796.1-P	Field mustard	nucleus	19.53	16.34
Bra025508.1-P	Field mustard	nucleus	19.72	15.9
Bra039926.1-P	Field mustard	nucleus	8.88	15.52
Bra030208.1-P	Field mustard	nucleus	9.07	15.13
Bra039927.1-P	Field mustard	nucleus	8.88	14.24
Bra000970.1-P	Field mustard	nucleus	18.34	14.22
Bra030207.1-P	Field mustard	nucleus	8.68	13.5
Bra037343.1-P	Field mustard	cytosol	15.78	11.25

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra017523	EnsemblPlants:Bra017523.1	EnsemblPlants:Bra017523.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4DLZ2	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254244A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT5G46830 (E=1e-132) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:-:16077978..16079501

Molecular Weight (calculated)

56096.2 Da

IEP (calculated)

6.156

GRAVY (calculated)

-0.482

Length

507 amino acids

Sequence
(BLAST)

001: MDSLNTNVTA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW TPSYYDYSGE SVLKWGDGIY KGEEADNTRR RRRRMTVAER
101: EHWSIILPEL SSMISDEDVP VIDGEGGVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDPI LASGCDRAKK GGDSGLQTIV CIPLDNGVLE
201: LGSTVEIQQN PDLFNKIRVV FSFEGSRDFL GDPNSNSFQP FSTHLENGGG STTVTVNANL YPNPVYPQTV NYATSPLERA LHSPNRNYPH QIPIDNGELL
301: HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI
401: QIQLNKLKEE MAGRNVVCRG GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM IQQATVKMGS RMYTQDQLRA
501: MLVSKIN

Best Arabidopsis Sequence Match ( AT5G46830.1 )
(BLAST)

001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S

Arabidopsis Description

BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.