CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92157
EER97533
EER98873
EER98969
EES15016
OQU82468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	EER92157	AT1G19180.1	18547396
AT1G32640.1	EER97533	AT1G19180.1	18547396
AT1G32640.1	EER98969	AT1G19180.1	18547396
AT1G32640.1	EER98873	AT1G48500.1	19309455
AT1G32640.1	EES15016	AT1G48500.1	19309455
AT1G32640.1	EER98873	AT3G17860.1	17637675
AT1G32640.1	EES15016	AT3G17860.1	17637675
AT1G32640.1	OQU82468	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75588	Sorghum	nucleus	54.48	57.79
OQU80776	Sorghum	nucleus	54.48	57.79
KXG25462	Sorghum	nucleus	54.48	54.68
OQU80778	Sorghum	nucleus	51.61	53.33
OQU80777	Sorghum	nucleus	51.97	51.79
OQU86344	Sorghum	nucleus	45.52	49.61
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	45.16	47.91
EER99201	Sorghum	nucleus	50.18	47.3
EER97058	Sorghum	cytosol, nucleus, plastid	43.01	43.48
Bra017527.1-P	Field mustard	nucleus	24.01	29.65
Bra013263.1-P	Field mustard	nucleus	23.3	23.99
Bra024992.1-P	Field mustard	nucleus	23.3	23.99
CDY70013	Canola	nucleus	18.64	20.63
VIT_02s0025g02610.t01	Wine grape	nucleus	25.09	19.39
AT4G00870.1	Thale cress	nucleus, plastid	28.32	18.68
Solyc10g009290.1.1	Tomato	nucleus	30.11	18.63
PGSC0003DMT400014097	Potato	nucleus	30.11	18.38
PGSC0003DMT400028057	Potato	nucleus	25.09	17.99
PGSC0003DMT400014089	Potato	nucleus	24.73	17.97
Solyc08g083170.1.1	Tomato	extracellular	24.73	17.83
KRH47834	Soybean	nucleus	28.67	17.24
KRH06400	Soybean	nucleus	28.67	17.17
Solyc10g009270.2.1	Tomato	nucleus	24.01	17.05
Solyc01g096370.2.1	Tomato	nucleus	27.24	16.89
PGSC0003DMT400047220	Potato	nucleus	27.24	16.81
PGSC0003DMT400031899	Potato	plastid	25.45	16.47
Bra017523.1-P	Field mustard	nucleus	29.39	16.17
VIT_15s0048g02820.t01	Wine grape	nucleus	28.67	16.1
AT5G46830.1	Thale cress	nucleus	29.03	15.85
Bra017520.1-P	Field mustard	nucleus	27.96	15.66
EES01345	Sorghum	nucleus	24.73	14.26
Bra024998.1-P	Field mustard	nucleus	29.39	14.14
KRH75613	Soybean	nucleus	32.26	14.13
PGSC0003DMT400002963	Potato	nucleus	30.11	14.05
Solyc08g005050.2.1	Tomato	nucleus	23.3	14.01
Bra010178.1-P	Field mustard	nucleus	30.11	14.0
AT4G17880.1	Thale cress	nucleus	29.39	13.92
PGSC0003DMT400015017	Potato	nucleus	22.58	13.82
KRH45440	Soybean	nucleus	32.26	13.76
Solyc08g008600.2.1	Tomato	nucleus	22.22	13.72
AT1G32640.1	Thale cress	nucleus	30.47	13.64
KRH74418	Soybean	nucleus	31.18	13.55
AT5G46760.1	Thale cress	nucleus	28.67	13.51
VIT_02s0012g01320.t01	Wine grape	nucleus	31.9	13.42
EES10849	Sorghum	nucleus	16.49	13.33
Solyc08g076930.1.1	Tomato	nucleus	30.82	12.48
KXG39194	Sorghum	nucleus	31.54	12.45
PGSC0003DMT400045204	Potato	nucleus	30.82	12.39
Bra024993.1-P	Field mustard	nucleus	16.49	12.2
OQU92034	Sorghum	nucleus	13.62	11.99
KRH39540	Soybean	nucleus	31.18	11.9
EER93685	Sorghum	mitochondrion	15.77	11.83
KXG24110	Sorghum	nucleus	16.85	11.81
EER93684	Sorghum	nucleus	15.77	11.43
KXG39824	Sorghum	nucleus	13.26	11.35
KXG37866	Sorghum	nucleus	15.05	11.32
KXG37671	Sorghum	nucleus	14.34	11.24
OQU77369	Sorghum	nucleus	16.85	11.19
OQU75589	Sorghum	nucleus	15.05	10.91
OQU92032	Sorghum	nucleus	13.26	10.88
EES19274	Sorghum	nucleus	21.51	10.22
EER99993	Sorghum	nucleus	22.22	9.97
OQU82119	Sorghum	nucleus	16.85	8.61
OQU82120	Sorghum	nucleus	17.92	8.5
OQU82117	Sorghum	nucleus	17.56	8.31
OQU88697	Sorghum	nucleus	19.35	7.98
OQU81560	Sorghum	nucleus	16.13	7.64
Bra013264.1-P	Field mustard	nucleus	6.09	5.72
CDY70012	Canola	nucleus	2.87	3.0

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8057869	UniProt:A0A1Z5RBF9	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:OQU80775	ProteinID:OQU80775	ProteinID:OQU80775.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF68	SMART:SM00353	EnsemblPlantsGene:SORBI_3007G183000	SUPFAM:SSF47459	UniParc:UPI0001A87CBA	RefSeq:XP_002444644.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:61602263..61603102

Molecular Weight (calculated)

29752.4 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.193

Length

279 amino acids

Sequence
(BLAST)

001: MAISSSFISG IMDELACRSF FSSIPQSPAF FSGAGGQHPV LEFSYCDVPE QWLEDDDGGG AEKLWDGTTA TVLGTGAATP SAPAAGNHDD VSDKLPAAPA
101: PPKRRRGRKP GPRTVGPVLS HVEAERQRRD RLNRRFCDLR AAVPTVSKMD RASLLADATA YIAELRGRAE RVEIEAKQQQ AVTAVVPPEA FKEKLEVRML
201: GQREAAALRL TTTAGTTPHD AAARLMVALC SLDLPVQHAY VCRVGGTTTV QDAVVDVPVA LRDDGVLRAV LLRSLQGSG

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.