Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:secretory
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 25464976
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014097 Potato nucleus 88.25 87.09
Solyc10g009270.2.1 Tomato nucleus 47.01 53.94
Solyc01g096370.2.1 Tomato nucleus 53.44 53.56
KRH06400 Soybean nucleus 50.11 48.5
KRH47834 Soybean nucleus 49.22 47.84
Solyc08g083170.1.1 Tomato extracellular 37.25 43.41
Solyc08g008600.2.1 Tomato nucleus 39.47 39.38
TraesCS1A01G369200.1 Wheat nucleus 16.41 37.37
TraesCS5B01G306600.1 Wheat nucleus 22.39 37.0
TraesCS5D01G313600.1 Wheat nucleus 22.62 36.56
TraesCS2A01G448500.1 Wheat nucleus 20.62 36.33
TraesCS5D01G313400.1 Wheat nucleus 21.95 36.26
Zm00001d031717_P001 Maize nucleus 20.4 36.22
TraesCS5B01G307000.1 Wheat nucleus 22.39 36.2
TraesCS1D01G374800.1 Wheat nucleus 21.06 35.85
TraesCS5A01G306200.1 Wheat nucleus 22.17 35.84
TraesCS5D01G313500.1 Wheat nucleus 22.17 35.84
TraesCSU01G222600.1 Wheat nucleus 19.51 35.77
TraesCS2B01G469200.1 Wheat nucleus 19.51 35.77
TraesCS5A01G306600.1 Wheat nucleus 21.73 35.64
TraesCS5A01G306500.1 Wheat nucleus 22.17 35.59
OQU80776 Sorghum nucleus 20.62 35.36
OQU75588 Sorghum nucleus 20.62 35.36
TraesCS7D01G102200.1 Wheat nucleus 19.96 35.16
TraesCS2B01G469300.1 Wheat nucleus 19.96 35.16
TraesCS5A01G306700.1 Wheat peroxisome 21.29 35.04
Os08t0543700-00 Rice nucleus, peroxisome, plastid 20.4 34.98
Os09t0519100-00 Rice nucleus 20.4 34.85
HORVU0Hr1G025420.1 Barley cytosol, nucleus 12.64 34.76
Zm00001d006150_P001 Maize nucleus 22.39 34.71
TraesCS5B01G306800.1 Wheat nucleus 21.51 34.64
TraesCS5D01G313700.1 Wheat nucleus 21.06 34.55
EER99201 Sorghum nucleus 22.39 34.12
TraesCS5A01G306400.1 Wheat nucleus 16.85 34.08
Zm00001d021164_P001 Maize nucleus 21.73 33.79
TraesCS5B01G307100.1 Wheat nucleus 20.4 33.7
EER97058 Sorghum cytosol, nucleus, plastid 20.62 33.7
HORVU5Hr1G080040.1 Barley nucleus 19.96 33.58
TraesCS1B01G387900.1 Wheat nucleus 17.74 33.47
Zm00001d052728_P001 Maize nucleus 20.4 33.45
KXG25462 Sorghum nucleus 20.4 33.09
OQU80777 Sorghum nucleus 20.4 32.86
HORVU5Hr1G079900.1 Barley cytosol 19.51 32.59
OQU80778 Sorghum nucleus 19.29 32.22
OQU86344 Sorghum nucleus 17.96 31.64
HORVU5Hr1G080080.1 Barley nucleus, plastid 14.63 31.43
Solyc08g005050.2.1 Tomato nucleus 31.49 30.6
OQU80775 Sorghum cytosol, nucleus, peroxisome, plastid 18.63 30.11
Solyc08g076930.1.1 Tomato nucleus 40.58 26.56
Solyc06g083980.1.1 Tomato nucleus 26.83 25.37
HORVU1Hr1G050560.1 Barley nucleus 37.25 24.56
Os10t0575000-01 Rice nucleus 37.92 24.46
TraesCS1B01G208000.1 Wheat nucleus 37.47 24.39
TraesCS1D01G196900.1 Wheat nucleus 37.47 24.32
TraesCS1A01G193200.1 Wheat nucleus 36.59 23.81
Zm00001d030028_P001 Maize nucleus 36.81 23.55
KXG39194 Sorghum nucleus 36.59 23.34
Zm00001d047017_P001 Maize nucleus 36.14 23.19
Solyc01g096050.2.1 Tomato nucleus 31.04 23.14
Solyc05g050560.1.1 Tomato nucleus 28.82 22.45
Solyc01g106460.2.1 Tomato nucleus 11.97 22.22
Solyc05g009640.2.1 Tomato cytosol, nucleus, peroxisome 10.86 20.94
Solyc06g064590.1.1 Tomato nucleus 11.97 19.22
Solyc09g065100.1.1 Tomato nucleus 27.49 18.24
Solyc08g081140.2.1 Tomato nucleus 24.61 17.73
Solyc02g091820.1.1 Tomato nucleus 12.64 17.48
Solyc06g064580.1.1 Tomato nucleus 11.75 17.43
Solyc02g091800.2.1 Tomato nucleus 12.86 16.71
Solyc02g091810.1.1 Tomato nucleus 10.64 15.09
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638UniProt:K4CYA5InterPro:MYC/MYB_N
PFAM:PF00010PFAM:PF14215PFscan:PS50888PANTHER:PTHR11514PANTHER:PTHR11514:SF40SMART:SM00353
SUPFAM:SSF47459EnsemblPlantsGene:Solyc10g009290.1EnsemblPlants:Solyc10g009290.1.1UniParc:UPI000276BDA1InterPro:bHLH_domSEG:seg
Description
No Description!
Coordinates
chr10:-:3284486..3285841
Molecular Weight (calculated)
50466.6 Da
IEP (calculated)
6.409
GRAVY (calculated)
-0.435
Length
451 amino acids
Sequence
(BLAST)
001: MDELMVSSSS SSSSFFIPSL LSQTSSNLQQ KLQNILKIQT DSWSYAIFWQ TTNDDDDGHL FLAWGDGHFH GTKSKTGVQS SEQSTERKNV IKGIQALICE
101: NGDEKVDDDD DDEVTDAEWF YVMSLAQSFS IGDGVPGKAF STASIIWLTG SQNLQFHTCK RAKEAHLHGI QTFVCIPTSN GVIEMGSNQL IKENWVLIQQ
201: VKSIFNNSIP HIVNCLEQNT NINPKTEELV SVSVSAECND SDSDCQLLVE KKTPKKRGRK PGATRETPLN HVEAERQRRE KLNHRFYALR SVVPHVTKMD
301: KASLLSDAVS YINELKSKVA ELETQLTRKS KKLKIECTDS FSIDNNSTAT TITNSVDQIR HNSFGVHSNL KVEVEVKILG PDAMVRVQSE NVNYPSTRLM
401: RALQDLELHV HHASISSVND IMLQDIVVKV PIGLSTEDRL KNALIRSIQH Q
Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)
001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
Arabidopsis Description
BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.