Factsheet for Solyc06g083980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051672	Potato	nucleus	98.53	98.53
VIT_07s0141g01060.t01	Wine grape	nucleus	55.77	54.18
KRH32144	Soybean	nucleus	56.6	53.57
KRH19522	Soybean	nucleus	56.81	53.56
Bra038458.1-P	Field mustard	nucleus	47.59	50.33
CDY32242	Canola	nucleus	47.59	50.33
CDY34468	Canola	nucleus	47.38	50.11
AT4G16430.1	Thale cress	nucleus	49.06	50.11
CDX90525	Canola	nucleus	45.7	47.81
Bra012720.1-P	Field mustard	nucleus	45.28	47.37
CDY09695	Canola	nucleus	44.44	43.53
Os01t0705700-01	Rice	nucleus	33.12	34.35
TraesCS3B01G288700.1	Wheat	nucleus	31.45	33.86
Zm00001d043706_P001	Maize	nucleus	33.12	33.83
EES01345	Sorghum	nucleus	33.96	33.47
TraesCS3A01G252900.1	Wheat	nucleus	31.45	32.68
HORVU3Hr1G066390.1	Barley	nucleus	31.66	32.47
Solyc05g050560.1.1	Tomato	nucleus	39.2	32.3
TraesCS3D01G253700.1	Wheat	nucleus	31.45	32.26
TraesCS3B01G284800.1	Wheat	nucleus	32.08	32.21
Solyc01g096050.2.1	Tomato	nucleus	40.67	32.07
Solyc10g009270.2.1	Tomato	nucleus	23.9	29.01
Solyc08g083170.1.1	Tomato	extracellular	22.85	28.17
Solyc10g009290.1.1	Tomato	nucleus	25.37	26.83
Solyc01g096370.2.1	Tomato	nucleus	25.16	26.67
Solyc08g008600.2.1	Tomato	nucleus	24.11	25.44
Solyc08g005050.2.1	Tomato	nucleus	21.59	22.2
Solyc08g076930.1.1	Tomato	nucleus	31.24	21.63
Solyc01g106460.2.1	Tomato	nucleus	9.43	18.52
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	8.6	17.52
Solyc06g064580.1.1	Tomato	nucleus	10.9	17.11
Solyc02g091820.1.1	Tomato	nucleus	11.32	16.56
Solyc08g081140.2.1	Tomato	nucleus	20.55	15.65
Solyc09g065100.1.1	Tomato	nucleus	21.59	15.15
Solyc06g064590.1.1	Tomato	nucleus	8.81	14.95
Solyc02g091810.1.1	Tomato	nucleus	9.64	14.47
Solyc02g091800.2.1	Tomato	nucleus	9.01	12.39

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152
GO:GO:0010629	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CAQ3
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF53
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc06g083980.1	EnsemblPlants:Solyc06g083980.1.1	UniParc:UPI000276B7CE	InterPro:bHLH_dom

Description

Transcription factor bHLH3 [Source:Projected from Arabidopsis thaliana (AT4G16430) UniProtKB/Swiss-Prot;Acc:O23487]

Coordinates

chr6:-:49262408..49263841

Molecular Weight (calculated)

52947.8 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.472

Length

477 amino acids

Sequence
(BLAST)

001: MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD WTYAIYWQVA KSKSGKSALI WGDGHCRETK IGQGEGANDS
101: AHQKMMDGNK KKMVLQKIHT CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE HFQSRSYLAK LARFETLVFV
201: PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAN TKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE
301: GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIL
401: EIDFHQRQDD AVVRVGCPLN AHPVSRVLKT FQEHQVVAQE SNVSLTENGE LVHMFSIRAP GPAAEDLKEK LTAALSK

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.