Factsheet for Solyc08g081140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005660.1.1
Solyc01g095640.1.1
Solyc03g081210.1.1
Solyc03g097340.1.1
Solyc08g081140.2.1
Solyc10g086250.1.1
Solyc10g086260.1.1
Solyc10g086270.1.1
Solyc10g086290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	Solyc10g086250.1.1	AT1G56650.1	12917293
AT1G63650.1	Solyc10g086260.1.1	AT1G56650.1	12917293
AT1G63650.1	Solyc10g086270.1.1	AT1G56650.1	12917293
AT1G63650.1	Solyc10g086290.1.1	AT1G56650.1	12917293
AT1G63650.1	Solyc10g086250.1.1	AT1G56650.1	15361138
AT1G63650.1	Solyc10g086260.1.1	AT1G56650.1	15361138
AT1G63650.1	Solyc10g086270.1.1	AT1G56650.1	15361138
AT1G63650.1	Solyc10g086290.1.1	AT1G56650.1	15361138
AT1G63650.1	Solyc08g081140.2.1	AT1G63650.1	12917293
AT1G63650.1	Solyc10g086250.1.1	AT1G66370.1	15361138
AT1G63650.1	Solyc10g086260.1.1	AT1G66370.1	15361138
AT1G63650.1	Solyc10g086270.1.1	AT1G66370.1	15361138
AT1G63650.1	Solyc10g086290.1.1	AT1G66370.1	15361138
AT1G63650.1	Solyc10g086250.1.1	AT1G66380.1	15361138
AT1G63650.1	Solyc10g086260.1.1	AT1G66380.1	15361138
AT1G63650.1	Solyc10g086270.1.1	AT1G66380.1	15361138
AT1G63650.1	Solyc10g086290.1.1	AT1G66380.1	15361138
AT1G63650.1	Solyc10g086250.1.1	AT1G66390.1	12917293
AT1G63650.1	Solyc10g086260.1.1	AT1G66390.1	12917293
AT1G63650.1	Solyc10g086270.1.1	AT1G66390.1	12917293
AT1G63650.1	Solyc10g086290.1.1	AT1G66390.1	12917293
AT1G63650.1	Solyc10g086250.1.1	AT1G66390.1	15361138
AT1G63650.1	Solyc10g086260.1.1	AT1G66390.1	15361138
AT1G63650.1	Solyc10g086270.1.1	AT1G66390.1	15361138
AT1G63650.1	Solyc10g086290.1.1	AT1G66390.1	15361138
AT1G63650.1	Solyc01g005660.1.1	AT3G13540.1	15361138
AT1G63650.1	Solyc03g081210.1.1	AT5G24520.1	12917293
AT1G63650.1	Solyc03g097340.1.1	AT5G24520.1	12917293
AT1G63650.1	Solyc01g095640.1.1	AT5G53200.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032140	Potato	nucleus	55.59	96.67
CDY45357	Canola	cytosol, golgi, nucleus	19.65	64.74
VIT_02s0025g03450.t01	Wine grape	nucleus	57.03	56.85
Os04t0557500-00	Rice	mitochondrion, plasma membrane	13.9	48.33
CDY39747	Canola	nucleus	41.69	46.69
GSMUA_Achr11P...	Banana	nucleus	34.98	46.5
CDY25513	Canola	nucleus	42.81	46.45
AT1G63650.1	Thale cress	nucleus	44.09	46.31
CDY58950	Canola	nucleus	41.85	45.41
CDY34367	Canola	nucleus	43.13	45.3
Bra025508.1-P	Field mustard	nucleus	45.37	45.15
Bra027653.1-P	Field mustard	nucleus	42.81	44.97
Bra027796.1-P	Field mustard	nucleus	42.65	44.06
AT5G41315.2	Thale cress	nucleus	45.37	44.03
CDY08314	Canola	nucleus	42.49	43.97
GSMUA_Achr8P11430_001	Banana	nucleus	38.02	43.59
GSMUA_Achr11P...	Banana	nucleus	37.06	42.03
GSMUA_Achr11P...	Banana	nucleus	39.62	41.82
GSMUA_Achr5P20600_001	Banana	nucleus	37.7	40.14
TraesCSU01G116000.1	Wheat	nucleus	27.64	37.94
TraesCS2D01G406900.1	Wheat	nucleus	33.87	37.39
TraesCS2A01G409600.2	Wheat	nucleus, plastid	33.07	37.1
HORVU2Hr1G096810.5	Barley	nucleus	32.75	36.54
CDY72121	Canola	nucleus	17.89	36.36
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	32.43	36.31
TraesCS2A01G409400.1	Wheat	nucleus	32.75	36.09
TraesCS2B01G428000.1	Wheat	nucleus	32.59	35.6
TraesCS4B01G397400.1	Wheat	nucleus	31.79	35.28
TraesCSU01G029400.1	Wheat	nucleus	32.11	35.14
TraesCS2D01G406800.1	Wheat	plastid	26.04	35.05
TraesCS5A01G489500.1	Wheat	nucleus	31.63	34.74
Os04t0557800-00	Rice	mitochondrion	31.79	34.67
OQU82120	Sorghum	nucleus	32.43	34.52
Zm00001d000236_P001	Maize	nucleus, plastid	30.67	34.47
TraesCS5A01G558500.1	Wheat	nucleus	31.95	34.19
Zm00001d026147_P002	Maize	nucleus	33.55	34.09
TraesCS4D01G224600.1	Wheat	nucleus	30.19	33.93
OQU81560	Sorghum	nucleus	31.63	33.62
Os01t0577300-00	Rice	cytosol	6.55	33.61
OQU82117	Sorghum	nucleus	31.47	33.39
TraesCS4B01G397800.1	Wheat	nucleus	27.16	33.33
TraesCS2D01G575600.3	Wheat	nucleus, plastid	31.15	33.11
TraesCS4B01G397300.1	Wheat	nucleus	17.57	27.03
Solyc09g065100.1.1	Tomato	nucleus	29.23	26.91
TraesCSU01G237100.1	Wheat	nucleus	15.65	26.7
TraesCSU01G228400.1	Wheat	nucleus	15.65	26.7
OQU82119	Sorghum	nucleus	22.04	25.27
Solyc10g009290.1.1	Tomato	nucleus	17.73	24.61
Os01t0576100-00	Rice	nucleus	11.98	23.89
Solyc01g096370.2.1	Tomato	nucleus	16.61	23.11
Solyc10g009270.2.1	Tomato	nucleus	14.38	22.9
Os11t0258700-00	Rice	mitochondrion	17.25	22.36
Solyc08g083170.1.1	Tomato	extracellular	13.1	21.19
Solyc06g083980.1.1	Tomato	nucleus	15.65	20.55
Solyc08g005050.2.1	Tomato	nucleus	15.02	20.26
Solyc01g096050.2.1	Tomato	nucleus	19.17	19.83
Solyc08g008600.2.1	Tomato	nucleus	14.22	19.69
Solyc05g050560.1.1	Tomato	nucleus	17.89	19.34
Solyc01g106460.2.1	Tomato	nucleus	7.03	18.11
Solyc08g076930.1.1	Tomato	nucleus	19.65	17.85
Solyc06g064590.1.1	Tomato	nucleus	7.83	17.44
Solyc06g064580.1.1	Tomato	nucleus	8.31	17.11
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	6.39	17.09
Solyc02g091820.1.1	Tomato	nucleus	7.35	14.11
Solyc02g091800.2.1	Tomato	nucleus	7.51	13.54
Solyc02g091810.1.1	Tomato	nucleus	6.87	13.52

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007267	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0046983	GO:GO:0048629	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CPB2
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc08g081140.2	EnsemblPlants:Solyc08g081140.2.1	UniParc:UPI000276BED9	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:64220802..64225666

Molecular Weight (calculated)

70057.6 Da

IEP (calculated)

5.452

GRAVY (calculated)

-0.546

Length

626 amino acids

Sequence
(BLAST)

001: MAMGHQDQDG VPGNLRKQLA LAVRGIQWSY AIFWSTAVTQ PGVLKWIDGY YNGDIKTRKT VQAGEVNEDQ LGLHRTEQLK ELYSSLLTSE SEEDLQPQAK
101: RPSASLSPED LTDTEWYFLV CMSFVFNVGQ GLPGKTLATN ETVWLCNAHQ AESKVFSRSL LAKSASIQTV VCFPYLGGVI ELGVTELVTE DPNLIQQIKN
201: SFLEVDYSVI LKRPNYVSND AKNDTNIGSQ KPDHNALEND AYPVEINSPH DSSNGFVANQ EAEDSLMVVD GIGETSQAQS WRFMDDNISN GANNSLNSSD
301: CISQNNANCE KLSPLSSGEK ETKPCPLDRQ ENDQKKPHLL DHQGDDAQYQ AVLSTLLKSS DQLTLGPHFR NMNKKSSFAS WKTDIQMPRF GTAQKLLKKV
401: LLEVPRMHAG VIHKFSRENG KKNSLWRPEV DDIDRNRVIS ERRRREKINE RFMHLASMLP TSSKVDKISL LDETIEYMKE LERRVQELEA RSARRSNDTA
501: EQTSDNCGTS KFNDIRGSLP NKRKACDMDE IEPESSNGLL KCSSADSIVI NMIDKEVSIK MSCLWSESLL LKIMEALTDL HMDCHTVQSS NLDGILSIAI
601: ESKSTGSKTL AVGTIREALQ RVVWKS

Best Arabidopsis Sequence Match ( AT5G41315.1 )
(BLAST)

001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.