Factsheet for Os04t0557800-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0127450-00
Os01t0576100-00
Os01t0577300-00
Os01t0695900-01
Os02t0682500-01
Os04t0557200-01
Os04t0557500-00
Os04t0557800-00
Os11t0258700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	Os01t0576100-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0577300-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557200-01	AT1G63650.1	12917293
AT1G63650.1	Os04t0557500-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557800-00	AT1G63650.1	12917293
AT1G63650.1	Os11t0258700-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0127450-00	AT1G71030.1	15361138
AT1G63650.1	Os01t0695900-01	AT3G13540.1	15361138
AT1G63650.1	Os02t0682500-01	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0258700-00	Rice	mitochondrion	61.67	73.29
Os04t0557500-00	Rice	mitochondrion, plasma membrane	19.51	62.22
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	56.27	57.78
OQU81560	Sorghum	nucleus	55.23	53.82
OQU82117	Sorghum	nucleus	55.23	53.73
OQU82120	Sorghum	nucleus	54.53	53.23
Os01t0577300-00	Rice	cytosol	11.15	52.46
Zm00001d000236_P001	Maize	nucleus, plastid	50.17	51.71
Zm00001d026147_P002	Maize	nucleus	53.83	50.16
Os01t0576100-00	Rice	nucleus	25.26	46.18
OQU82119	Sorghum	nucleus	41.64	43.77
GSMUA_Achr11P...	Banana	nucleus	34.67	42.25
GSMUA_Achr8P11430_001	Banana	nucleus	36.76	38.64
GSMUA_Achr11P...	Banana	nucleus	36.76	35.58
GSMUA_Achr11P...	Banana	nucleus	33.45	34.78
GSMUA_Achr5P20600_001	Banana	nucleus	34.67	33.84
VIT_02s0025g03450.t01	Wine grape	nucleus	36.24	33.12
AT1G63650.1	Thale cress	nucleus	33.28	32.05
Solyc08g081140.2.1	Tomato	nucleus	34.67	31.79
KRH41187	Soybean	nucleus	34.84	31.75
VIT_15s0046g02560.t01	Wine grape	nucleus	35.89	31.26
KRH59908	Soybean	nucleus	34.15	31.06
Bra027796.1-P	Field mustard	nucleus	32.75	31.02
Bra027653.1-P	Field mustard	nucleus	31.88	30.7
Bra025508.1-P	Field mustard	nucleus	33.62	30.68
AT5G41315.2	Thale cress	nucleus	32.75	29.15
KRH48144	Soybean	nucleus	32.06	28.31
KRH65046	Soybean	nucleus	31.88	28.28
AT4G00480.2	Thale cress	nucleus	27.53	27.24
PGSC0003DMT400032140	Potato	nucleus	15.16	24.17
Bra000970.1-P	Field mustard	nucleus	26.48	23.24
Os01t0705700-01	Rice	nucleus	17.77	22.17
Os07t0211500-00	Rice	nucleus	18.29	21.97
Bra037343.1-P	Field mustard	cytosol	25.44	20.53
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	8.89	19.39
Os09t0519100-00	Rice	nucleus	8.71	18.94
Os10t0575000-01	Rice	nucleus	21.43	17.6
Os01t0235700-01	Rice	nucleus	18.29	17.02
Os03t0229100-00	Rice	plastid	8.36	16.78
Os12t0632600-00	Rice	nucleus	9.23	15.06
Os03t0725800-01	Rice	nucleus	8.71	13.93
Os03t0671800-01	Rice	nucleus	9.06	13.51
Os10t0104300-00	Rice	nucleus	7.67	13.46
Os03t0671000-00	Rice	mitochondrion	3.31	7.48

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4336636	ProteinID:BAF15446.1	ProteinID:BAS90447.1	ProteinID:CAE03483.2
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	EnsemblPlantsGene:Os04g0557800	EnsemblPlants:Os04t0557800-00	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	UniProt:Q7XPS3	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000021C75D	RefSeq:XP_015635227.1	InterPro:bHLH_dom	SEG:seg	:

Description

PURPLE LEAF, TRANSCRIPTIONAL ACTIVATOR ASimilar to R-type basic helix-loop-helix protein. (Os04t0557800-00)

Coordinates

chr4:-:27949384..27955640

Molecular Weight (calculated)

62410.5 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.261

Length

574 amino acids

Sequence
(BLAST)

001: MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS MNLMADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL
101: PEDLGDTEWY YVVCMTYAFG PRQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD PISEDPALVD RIAASFWDTP
201: PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA VAGGEVAECE PNSDNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV
301: PTSSPAPDQA PAAEATDVDD VVVAALDSSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH
401: VMSERRRREK LNEMFLILKS VVPSIHRVDK ASILAETIAY LKELEKRVEE LESSSQPSPC PLETRSRRKC REITGKKVSA GAKRKAPAPE VASDDDTDGE
501: RRHCVSNVNV TIMDNKEVLL ELQCQWKELL MTRVFDAIKG VSLDVLSVQA STSDGLLGLK IQAKFASSAA VEPG

Best Arabidopsis Sequence Match ( AT1G63650.3 )
(BLAST)

001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC

Arabidopsis Description

BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.