Factsheet for Os02t0682500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0576100-00
Os01t0577300-00
Os04t0557200-01
Os04t0557500-00
Os04t0557800-00
Os11t0258700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	Os01t0576100-00	AT1G63650.1	12917293
AT5G24520.1	Os01t0577300-00	AT1G63650.1	12917293
AT5G24520.1	Os04t0557200-01	AT1G63650.1	12917293
AT5G24520.1	Os04t0557500-00	AT1G63650.1	12917293
AT5G24520.1	Os04t0557800-00	AT1G63650.1	12917293
AT5G24520.1	Os11t0258700-00	AT1G63650.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017616_P001	Maize	extracellular	84.23	84.7
TraesCS6B01G286700.1	Wheat	cytosol	83.1	82.87
TraesCS6A01G259400.1	Wheat	cytosol	83.1	82.87
EES05725	Sorghum	cytosol	72.11	80.5
HORVU0Hr1G016450.1	Barley	cytosol	83.66	78.78
CDX80449	Canola	cytosol	46.76	69.75
GSMUA_Achr4P29160_001	Banana	cytosol	61.13	68.45
VIT_16s0098g00870.t01	Wine grape	nucleus	61.13	64.58
KRH53635	Soybean	cytosol	60.56	63.99
KRH64293	Soybean	cytosol	60.0	63.58
Bra009770.1-P	Field mustard	cytosol	60.28	63.5
AT5G24520.1	Thale cress	cytosol	60.56	63.05
PGSC0003DMT400068077	Potato	cytosol	60.28	62.57
Solyc03g097340.1.1	Tomato	cytosol	59.72	61.99
PGSC0003DMT400001513	Potato	nucleus	59.44	61.7
PGSC0003DMT400094468	Potato	cytosol	54.08	55.98
CDY05440	Canola	cytosol	18.87	55.83
Bra029411.1-P	Field mustard	cytosol	18.87	55.83
Solyc03g081210.1.1	Tomato	cytosol	51.27	53.22
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	51.27	44.28
CDY05439	Canola	cytosol	12.39	43.14
Bra029410.1-P	Field mustard	cytosol	12.39	43.14
GSMUA_Achr5P10240_001	Banana	nucleus	23.38	34.02

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4330331	ProteinID:BAD27834.1	ProteinID:BAF09665.1	ProteinID:BAS80310.1
ProteinID:EAZ24196.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957	GO:GO:0009987	GO:GO:0010026
GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os02g0682500	EnsemblPlants:Os02t0682500-01	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	UniProt:Q3V826	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00003CE519
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015626852.1
SEG:seg	:	:	:	:	:

Description

TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA 1ASimilar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein). (Os02t0682500-01)

Coordinates

chr2:-:27906512..27909385

Molecular Weight (calculated)

38587.5 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.040

Length

355 amino acids

Sequence
(BLAST)

001: MEQPKPPSVA ASAAEAQNPN AFTCELPHSI YALAFSPSAP VLAAGSFLED LHNRVSLLSF DPVHPTAASF RALPALSFDH PYPPTKLQFH PRAASAPHLL
101: ASSSDALRLW LAPLDDLAAT ATAAAPELRS VLDNRKTSAS EFCAPLTSFD WNEAEPRRIG TASIDTTCTI WDIERGVVET QLIAHDKAVH DIAWGENGIF
201: ASVSADGSVR VFDLRDKEHS TIFYESPRPD TPLLRLAWNR YDFHYMATLL MDSSAVVVLD MRAPGVPVAE LHRHRACANA VAWAPQATRH LCSAGDDGQA
301: LIWELPATPG AVPAEGIDPV MVYDAGAEIN QLQWAAAYPE WISIAFENKV QLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.