CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86891
CDX99505
CDY08314
CDY25513
CDY34367
CDY72121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	CDY08314	AT1G63650.1	12917293
AT5G24520.1	CDY25513	AT1G63650.1	12917293
AT5G24520.1	CDY34367	AT1G63650.1	12917293
AT5G24520.1	CDY72121	AT1G63650.1	12917293
AT5G24520.1	CDX86891	AT4G09820.1	15255866
AT5G24520.1	CDX99505	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05440	Canola	cytosol	37.4	74.17
Bra009770.1-P	Field mustard	cytosol	94.54	66.77
AT5G24520.1	Thale cress	cytosol	90.76	63.34
VIT_16s0098g00870.t01	Wine grape	nucleus	83.19	58.93
KRH53635	Soybean	cytosol	81.09	57.44
KRH64293	Soybean	cytosol	80.25	57.01
Solyc03g097340.1.1	Tomato	cytosol	79.41	55.26
PGSC0003DMT400068077	Potato	cytosol	78.99	54.97
PGSC0003DMT400001513	Potato	nucleus	78.99	54.97
CDY05439	Canola	cytosol	22.69	52.94
CDX98027	Canola	extracellular	14.29	50.75
GSMUA_Achr4P29160_001	Banana	cytosol	67.23	50.47
TraesCS6A01G259400.1	Wheat	cytosol	72.27	48.31
TraesCS6B01G286700.1	Wheat	cytosol	71.85	48.03
Zm00001d017616_P001	Maize	extracellular	71.01	47.88
PGSC0003DMT400094468	Potato	cytosol	68.91	47.81
Os02t0682500-01	Rice	cytosol	69.75	46.76
Solyc03g081210.1.1	Tomato	cytosol	65.97	45.91
HORVU0Hr1G016450.1	Barley	cytosol	71.85	45.36
CDY16039	Canola	cytosol	64.71	44.51
CDY26600	Canola	cytosol	64.29	44.22
EES05725	Sorghum	cytosol	58.82	44.03
CDY19411	Canola	extracellular, plastid	13.87	36.67
CDY65575	Canola	cytosol	20.17	36.36
CDY70647	Canola	cytosol	20.17	36.36
GSMUA_Achr5P10240_001	Banana	nucleus	11.34	11.07
CDY65574	Canola	nucleus	4.2	9.52
CDY70646	Canola	nucleus	4.2	9.52
CDY39498	Canola	cytosol	2.1	4.24

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078CWP2	EnsemblPlants:CDX80449	ProteinID:CDX80449	ProteinID:CDX80449.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00133532001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE37B0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaC07g29950D

Coordinates

chrLK031821:-:533220..541094

Molecular Weight (calculated)

26369.4 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.147

Length

238 amino acids

Sequence
(BLAST)

001: MMLSTHIQRA PPPAEPVSVL NNSKTSEFCA PLTSFDWNDV EPKRLGTCSI DTTCTIWDVE RSVVETQLIA HDKEVHDIAW GEARVFASVS ADGSVRIFDL
101: RDKEHSTIIY ESPQPDTPLL RLAWNKQDLR CMATILMDSN KVVILDIRSP TMPVAELERH QGSVNAIAWA PQSCKHICSG GDDAQALIWE LPTMAGPNGI
201: DPMSVYSAGS EINQLQWSAS LPDWIGIAFA NKMQLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.