Factsheet for PGSC0003DMT400094468

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400032140
PGSC0003DMT400033569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT5G24520.1	PGSC0003DMT400028052	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400028054	AT4G09820.1	15255866
AT5G24520.1	PGSC0003DMT400033569	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g081210.1.1	Tomato	cytosol	87.46	87.72
PGSC0003DMT400068077	Potato	cytosol	82.8	83.04
PGSC0003DMT400001513	Potato	nucleus	82.51	82.75
VIT_16s0098g00870.t01	Wine grape	nucleus	70.85	72.32
CDX80449	Canola	cytosol	47.81	68.91
KRH53635	Soybean	cytosol	65.89	67.26
Bra009770.1-P	Field mustard	cytosol	65.6	66.77
AT5G24520.1	Thale cress	cytosol	66.18	66.57
KRH64293	Soybean	cytosol	65.01	66.57
GSMUA_Achr4P29160_001	Banana	cytosol	58.6	63.41
CDY05440	Canola	cytosol	20.7	59.17
Bra029411.1-P	Field mustard	cytosol	20.7	59.17
Zm00001d017616_P001	Maize	extracellular	55.69	54.11
Os02t0682500-01	Rice	cytosol	55.98	54.08
TraesCS6A01G259400.1	Wheat	cytosol	55.1	53.09
PGSC0003DMT400025654	Potato	cytosol	53.64	53.03
TraesCS6B01G286700.1	Wheat	cytosol	54.81	52.81
EES05725	Sorghum	cytosol	48.69	52.52
HORVU0Hr1G016450.1	Barley	cytosol	54.81	49.87
GSMUA_Achr5P10240_001	Banana	nucleus	21.87	30.74

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1DU76	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400044039	PGSC:PGSC0003DMG400044039
EnsemblPlants:PGSC0003DMT400094468	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295A49C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Transparent testa glabra 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400044039]

Coordinates

chr3:+:47414301..47415332

Molecular Weight (calculated)

38588.7 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.234

Length

343 amino acids

Sequence
(BLAST)

001: MEKKSGKKFH LRSGNSVTYD SSYPIYAMAF SSFTSSLPNR HPRIAIGSFI EEINNCVDIL SFDADNLTLK PIPNLCFEHP YPPTKLMFHP NPFDSLKSND
101: ILASCSDYLR LWEVGDTSIE PLFTLSKNKT SEYVAPLTSF DWNEVEPRRI GTSSIDTTCT IWDVEIGAIE AQIIAHDKEV YDIAWAEAGV FASASADGSV
201: RIFDLRRKEH TTIIYESPEP GTQLLRLAWN KHDLRYLATM SMDCNKIMIL DIRSRERPVA ELARHQASVN AIAWAPQSRR HICSAGDDGQ ALIWELPTVV
301: GTNGIDHMAR YSAGAEINQI QWSAAHHDWI AIAFSNKLQL LKV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.