Factsheet for Bra029411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	Bra027653.1-P	AT1G63650.1	12917293
AT5G24520.1	Bra027796.1-P	AT1G63650.1	12917293
AT5G24520.1	Bra037887.1-P	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05440	Canola	cytosol	99.17	99.17
Bra009770.1-P	Field mustard	cytosol	75.83	27.0
AT5G24520.1	Thale cress	cytosol	75.83	26.69
Bra029410.1-P	Field mustard	cytosol	21.67	25.49
Solyc03g097340.1.1	Tomato	cytosol	72.5	25.44
PGSC0003DMT400068077	Potato	cytosol	71.67	25.15
PGSC0003DMT400001513	Potato	nucleus	71.67	25.15
VIT_16s0098g00870.t01	Wine grape	nucleus	69.17	24.7
KRH64293	Soybean	cytosol	68.33	24.48
KRH53635	Soybean	cytosol	68.33	24.4
GSMUA_Achr4P29160_001	Banana	cytosol	59.17	22.4
PGSC0003DMT400094468	Potato	cytosol	59.17	20.7
TraesCS6A01G259400.1	Wheat	cytosol	60.0	20.22
TraesCS6B01G286700.1	Wheat	cytosol	60.0	20.22
Zm00001d017616_P001	Maize	extracellular	57.5	19.55
Os02t0682500-01	Rice	cytosol	55.83	18.87
HORVU0Hr1G016450.1	Barley	cytosol	59.17	18.83
EES05725	Sorghum	cytosol	49.17	18.55
Solyc03g081210.1.1	Tomato	cytosol	50.83	17.84
Bra026947.1-P	Field mustard	cytosol	55.0	17.28
Bra019798.1-P	Field mustard	extracellular	6.67	11.94
GSMUA_Achr5P10240_001	Banana	nucleus	10.0	4.92

Protein Annotations

EnsemblPlants:Bra029411.1	EnsemblPlants:Bra029411.1-P	EnsemblPlantsGene:Bra029411	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2
SUPFAM:SSF50978	UniParc:UPI000254721F	UniProt:M4EKU4	MapMan:35.1	:	:

Description

AT5G24520 (E=4e-038) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding

Coordinates

chrA02:-:25302854..25303216

Molecular Weight (calculated)

13456.2 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.362

Length

120 amino acids

Sequence
(BLAST)

001: MTARGEKLES LRLPPPMGPS GSFDLHDKEH YTIIYESPQA DTPLLRIAWN KQDLRYMATI LMDSNKVVIL DIRSPKMPVA ELERHQGSVN GLAWALQSCK
101: HIYSDGIDPM SVYSAGSEIN

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.