Factsheet for Solyc03g081210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081140.2.1
Solyc09g065100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	Solyc08g081140.2.1	AT1G63650.1	12917293
AT5G24520.1	Solyc09g065100.1.1	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094468	Potato	cytosol	87.72	87.46
Solyc03g097340.1.1	Tomato	cytosol	76.02	76.02
VIT_16s0098g00870.t01	Wine grape	nucleus	67.25	68.45
KRH53635	Soybean	cytosol	65.2	66.37
CDX80449	Canola	cytosol	45.91	65.97
KRH64293	Soybean	cytosol	64.04	65.37
Bra009770.1-P	Field mustard	cytosol	63.45	64.39
AT5G24520.1	Thale cress	cytosol	63.74	63.93
GSMUA_Achr4P29160_001	Banana	cytosol	58.48	63.09
Zm00001d017616_P001	Maize	extracellular	53.22	51.56
Os02t0682500-01	Rice	cytosol	53.22	51.27
CDY05440	Canola	cytosol	17.84	50.83
Bra029411.1-P	Field mustard	cytosol	17.84	50.83
TraesCS6A01G259400.1	Wheat	cytosol	52.63	50.56
TraesCS6B01G286700.1	Wheat	cytosol	52.34	50.28
Solyc04g082470.1.1	Tomato	nucleus	50.58	49.86
EES05725	Sorghum	cytosol	45.91	49.37
HORVU0Hr1G016450.1	Barley	cytosol	52.34	47.48
GSMUA_Achr5P10240_001	Banana	nucleus	20.76	29.1

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4BHZ8	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g081210.1	EnsemblPlants:Solyc03g081210.1.1	UniParc:UPI000276836A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chr3:+:52117388..52118416

Molecular Weight (calculated)

38479.6 Da

IEP (calculated)

5.359

GRAVY (calculated)

-0.204

Length

342 amino acids

Sequence
(BLAST)

001: MEKKSGKKSH LRSGNSVTYD SSYPIYAMAF SSFTSSLPNC HPRIAIGSFI EEINNCVDIL SFDAYNLTLK PIPNLCFEHP YPPTKLMFHP NPFDSLKSND
101: ILASCSDYLR LWEVRDTSIK DLVTFNKNKS GEYVAPLTSF DWNDVEPRRI GTSSIDTTCT IWDVEIGAFE TQIIAHDKEV YDIAWAEAAV FASVSADGSV
201: RIFDLRMKDY TTIIYESPEP GTQLLKLAWN KHNLRYLAVM SDSNKIMILD MSSPGRPLVE LARHQVSFNA IAWSPQSQRH ICSAGDDGQA LIWELPTVER
301: PNGIDPMAMY SAGAEINQIQ WSAAHHDWIA IAFSNKLQLL NV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.