Factsheet for Solyc09g065100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005660.1.1
Solyc01g111500.2.1
Solyc03g081210.1.1
Solyc03g097340.1.1
Solyc09g065100.1.1
Solyc10g055410.1.1
Solyc10g086250.1.1
Solyc10g086260.1.1
Solyc10g086270.1.1
Solyc10g086290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	Solyc10g086250.1.1	AT1G56650.1	15361138
AT4G09820.1	Solyc10g086260.1.1	AT1G56650.1	15361138
AT4G09820.1	Solyc10g086270.1.1	AT1G56650.1	15361138
AT4G09820.1	Solyc10g086290.1.1	AT1G56650.1	15361138
AT4G09820.1	Solyc10g086250.1.1	AT1G56650.1	18532977
AT4G09820.1	Solyc10g086260.1.1	AT1G56650.1	18532977
AT4G09820.1	Solyc10g086270.1.1	AT1G56650.1	18532977
AT4G09820.1	Solyc10g086290.1.1	AT1G56650.1	18532977
AT4G09820.1	Solyc10g086250.1.1	AT1G66370.1	15361138
AT4G09820.1	Solyc10g086260.1.1	AT1G66370.1	15361138
AT4G09820.1	Solyc10g086270.1.1	AT1G66370.1	15361138
AT4G09820.1	Solyc10g086290.1.1	AT1G66370.1	15361138
AT4G09820.1	Solyc10g086250.1.1	AT1G66380.1	15361138
AT4G09820.1	Solyc10g086260.1.1	AT1G66380.1	15361138
AT4G09820.1	Solyc10g086270.1.1	AT1G66380.1	15361138
AT4G09820.1	Solyc10g086290.1.1	AT1G66380.1	15361138
AT4G09820.1	Solyc10g086250.1.1	AT1G66390.1	15361138
AT4G09820.1	Solyc10g086260.1.1	AT1G66390.1	15361138
AT4G09820.1	Solyc10g086270.1.1	AT1G66390.1	15361138
AT4G09820.1	Solyc10g086290.1.1	AT1G66390.1	15361138
AT4G09820.1	Solyc01g005660.1.1	AT3G13540.1	15361138
AT4G09820.1	Solyc09g065100.1.1	AT4G09820.1	18532977
AT4G09820.1	Solyc01g111500.2.1	AT4G38620.1	15361138
AT4G09820.1	Solyc10g055410.1.1	AT4G38620.1	15361138
AT4G09820.1	Solyc03g081210.1.1	AT5G24520.1	15255866
AT4G09820.1	Solyc03g097340.1.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033569	Potato	nucleus	78.97	91.02
VIT_07s0104g00090.t01	Wine grape	nucleus	60.15	58.76
KRH71432	Soybean	nucleus	54.26	56.51
KRH32008	Soybean	extracellular, plastid	54.71	56.02
GSMUA_Achr3P17620_001	Banana	nucleus	45.44	54.79
AT4G09820.1	Thale cress	nucleus	41.03	53.86
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	44.12	52.45
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	44.56	51.53
CDX86891	Canola	nucleus	37.65	49.14
CDX99505	Canola	nucleus	37.35	48.75
Bra037887.1-P	Field mustard	nucleus	35.44	48.49
GSMUA_Achr6P21490_001	Banana	nucleus	45.0	47.0
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	36.76	39.94
TraesCS1B01G112900.1	Wheat	nucleus	35.59	38.35
OQU88697	Sorghum	nucleus	37.35	37.52
Zm00001d019170_P001	Maize	nucleus	36.62	36.94
TraesCS1B01G113100.4	Wheat	nucleus	36.76	36.34
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	25.88	34.58
TraesCS1D01G094200.1	Wheat	nucleus	30.74	33.12
Solyc08g081140.2.1	Tomato	nucleus	26.91	29.23
Solyc10g009290.1.1	Tomato	nucleus	18.24	27.49
Solyc10g009270.2.1	Tomato	nucleus	15.29	26.46
Solyc08g083170.1.1	Tomato	extracellular	15.0	26.36
Solyc01g096370.2.1	Tomato	nucleus	16.62	25.11
Solyc01g106460.2.1	Tomato	nucleus	8.68	24.28
Solyc08g008600.2.1	Tomato	nucleus	14.85	22.35
Solyc02g091820.1.1	Tomato	nucleus	10.44	21.78
Solyc06g083980.1.1	Tomato	nucleus	15.15	21.59
Solyc06g064590.1.1	Tomato	nucleus	8.82	21.35
Solyc08g005050.2.1	Tomato	nucleus	13.09	19.18
Solyc05g050560.1.1	Tomato	nucleus	16.32	19.17
Solyc08g076930.1.1	Tomato	nucleus	19.41	19.16
Solyc01g096050.2.1	Tomato	nucleus	16.91	19.01
Solyc02g091810.1.1	Tomato	nucleus	8.68	18.55
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	6.32	18.38
Solyc06g064580.1.1	Tomato	nucleus	7.5	16.78
Solyc02g091800.2.1	Tomato	nucleus	7.94	15.56

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ALC74034.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000976
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009791	GO:GO:0009867	GO:GO:0009987	GO:GO:0010026	GO:GO:0010214	GO:GO:0019748
GO:GO:0030154	GO:GO:0031542	GO:GO:0046983	GO:GO:0048316	GO:GO:2000029	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CUD7	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc09g065100.1
EnsemblPlants:Solyc09g065100.1.1	UniParc:UPI000276C50C	InterPro:bHLH_dom	SEG:seg	:	:

Description

Basic helix-loop-helix transcription factor [Source:UniProtKB/TrEMBL;Acc:K4CUD7]

Coordinates

chr9:+:62949355..62956809

Molecular Weight (calculated)

75011.4 Da

IEP (calculated)

4.829

GRAVY (calculated)

-0.410

Length

680 amino acids

Sequence
(BLAST)

001: MEIIQPNSLQ LQNMLQNSVQ SVKWTYSIFW QFCPKQGVLV WRDGYYNGAI KTRKTVQPME VTAEEASLHR SQQLRELYDS LSAGDSNPPA RRPSAALSPE
101: DLTESEWFYL MCVSFSFPPP IGLPGKAYSK KHHIWIMGAN DVDSKVFCRA ILAKTVVCIP LLDGVVELGT IEKVQEDIGF IHRVKSFFNE PQQAQPPKPA
201: LSEHSTSDPA AFSEPHFYFS NTPSSAGICP ADQDGRITGE EENEDEDEDE AEDDEDENDE AELDSDGIAI QSGAGAANPM AAEASELMQL DMSEAIRLGS
301: PDDGSNNMDT DLYLDGISQA GNTADSFKAE TAISWANFQD LQHLPGIPSY DELSQEDTHY SQTVSAVLEH LSNTSSKFAS SATIMGSISP DSAQSAFTLW
401: PVTCSPNLSH CRRHDIGDGS GTTSQWLLKS ILFTVPFLHS TKKLSEALSP KSRDAAAADS SAAASRFRKG CTINSCTQQE ETSGNHVLAE RRRREKLNER
501: FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKVQDLEAR DRHTEITKKS DEKSGSPIVK AFPVKGKRRM KSTVEGSIVG APAKMTGSPP MEEEVLQVEV
601: SIIENDALVE LRCPYKEGLL LDVMQVLREL KVEVVAIQSS LSTGLLLAEL RAKVKENIYG RKASILEVKK SINQIIPRVN

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.