Factsheet for Solyc10g086270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081140.2.1
Solyc09g065100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	Solyc08g081140.2.1	AT1G63650.1	12917293
AT1G56650.1	Solyc08g081140.2.1	AT1G63650.1	15361138
AT1G56650.1	Solyc09g065100.1.1	AT4G09820.1	15361138
AT1G56650.1	Solyc09g065100.1.1	AT4G09820.1	18532977
AT1G66370.1	Solyc08g081140.2.1	AT1G63650.1	15361138
AT1G66370.1	Solyc09g065100.1.1	AT4G09820.1	15361138
AT1G66380.1	Solyc08g081140.2.1	AT1G63650.1	15361138
AT1G66380.1	Solyc09g065100.1.1	AT4G09820.1	15361138
AT1G66390.1	Solyc08g081140.2.1	AT1G63650.1	12917293
AT1G66390.1	Solyc08g081140.2.1	AT1G63650.1	15361138
AT1G66390.1	Solyc09g065100.1.1	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G66380.1	Thale cress	nucleus	35.52	66.19
VIT_02s0033g00370.t01	Wine grape	nucleus	23.94	65.96
CDY72660	Canola	nucleus	33.2	65.65
Solyc10g086260.1.1	Tomato	nucleus	67.18	63.5
VIT_02s0033g00450.t01	Wine grape	nucleus	35.91	58.86
CDY72006	Canola	nucleus	36.29	53.71
Solyc10g086290.1.1	Tomato	nucleus	52.9	51.7
Solyc10g086250.1.1	Tomato	nucleus	54.83	51.64
KRH01212	Soybean	nucleus	37.07	50.79
KRH40047	Soybean	nucleus	42.47	46.61
VIT_14s0006g01290.t01	Wine grape	nucleus	43.63	46.5
VIT_14s0006g01280.t01	Wine grape	nucleus	43.24	46.09
KRH40053	Soybean	nucleus	41.31	45.53
CDY70737	Canola	nucleus	39.77	45.18
VIT_02s0033g00400.t01	Wine grape	nucleus	38.61	44.64
VIT_02s0033g00430.t01	Wine grape	nucleus	38.22	44.2
KRH01217	Soybean	nucleus	39.38	44.16
AT1G66370.1	Thale cress	nucleus	41.7	43.9
KRH40049	Soybean	nucleus	39.38	43.04
AT1G66390.1	Thale cress	nucleus	40.93	42.57
CDX96151	Canola	nucleus	40.54	42.51
Bra004162.1-P	Field mustard	nucleus	40.54	42.51
VIT_02s0033g00410.t01	Wine grape	nucleus	40.93	42.4
AT1G56650.1	Thale cress	nucleus	40.15	41.94
CDY55040	Canola	nucleus	40.15	41.77
Bra039763.1-P	Field mustard	nucleus	40.15	41.77
VIT_02s0033g00390.t01	Wine grape	nucleus	42.47	41.51
CDY49630	Canola	nucleus	38.22	41.42
CDY58386	Canola	nucleus, plastid	39.77	41.37
Bra001917.1-P	Field mustard	nucleus	39.77	41.37
VIT_14s0006g01340.t01	Wine grape	nucleus	37.84	41.0
VIT_02s0033g00460.t01	Wine grape	mitochondrion	30.5	39.7
KRG93566	Soybean	nucleus	38.22	39.13
PGSC0003DMT400036281	Potato	extracellular	31.27	38.94
CDY53214	Canola	nucleus	38.22	35.74
KRH21221	Soybean	nucleus	18.92	20.85
KRH40048	Soybean	cytosol	6.18	15.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4D459	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF526
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g086270.1	EnsemblPlants:Solyc10g086270.1.1	UniParc:UPI00027694BD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:65144661..65145610

Molecular Weight (calculated)

29753.4 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.657

Length

259 amino acids

Sequence
(BLAST)

001: MNSTSMSSLG VRKGSWTEQE DLLLRKCINK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL RPHIKRGDFA SDEIDLILRL HKLLGNRWSL IAGRLPGRTA
101: NDVKNYWNTN LLRKVNITKI VPREKFKSKR GEISTKIEII KPQARKFISN TEKNITNNIV IVDKEEECKE IISEKQTRDA SIDNGDEWWA NLLENCNDDV
201: VEEEEGGGGG VTDYGKTITS LLHEEITPPL NGGGNIMQQE QSDGWDDFFV DIDIWDLLN

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.