Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72660 | Canola | nucleus | 43.5 | 81.68 |
| AT1G66380.1 | Thale cress | nucleus | 45.53 | 80.58 |
| CDY72006 | Canola | nucleus | 48.78 | 68.57 |
| CDY58386 | Canola | nucleus, plastid | 67.48 | 66.67 |
| CDY55040 | Canola | nucleus | 67.48 | 66.67 |
| Bra039763.1-P | Field mustard | nucleus | 67.48 | 66.67 |
| Bra001917.1-P | Field mustard | nucleus | 66.67 | 65.86 |
| AT1G66390.1 | Thale cress | nucleus | 66.26 | 65.46 |
| AT1G56650.1 | Thale cress | nucleus | 65.85 | 65.32 |
| CDY70737 | Canola | nucleus | 58.94 | 63.6 |
| CDY49630 | Canola | nucleus | 60.57 | 62.34 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 23.58 | 61.7 |
| CDX96151 | Canola | nucleus | 61.38 | 61.13 |
| Bra004162.1-P | Field mustard | nucleus | 60.98 | 60.73 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 38.62 | 60.13 |
| CDY53214 | Canola | nucleus | 59.35 | 52.71 |
| KRH01212 | Soybean | nucleus | 37.4 | 48.68 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 47.56 | 48.15 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 40.24 | 44.2 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 39.84 | 43.75 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 43.09 | 43.62 |
| Solyc10g086270.1.1 | Tomato | nucleus | 43.9 | 41.7 |
| Solyc10g086290.1.1 | Tomato | nucleus | 44.72 | 41.51 |
| KRH40053 | Soybean | nucleus | 39.43 | 41.28 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 33.33 | 41.21 |
| KRH01217 | Soybean | nucleus | 38.62 | 41.13 |
| Solyc10g086260.1.1 | Tomato | nucleus | 45.53 | 40.88 |
| Solyc10g086250.1.1 | Tomato | nucleus | 45.12 | 40.36 |
| KRH40049 | Soybean | nucleus | 38.62 | 40.08 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 42.68 | 39.62 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 40.24 | 39.6 |
| KRH40047 | Soybean | nucleus | 37.8 | 39.41 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 37.4 | 38.49 |
| KRG93566 | Soybean | nucleus | 37.4 | 36.36 |
| PGSC0003DMT400036281 | Potato | extracellular | 21.14 | 25.0 |
| PGSC0003DMT400036284 | Potato | nucleus | 20.73 | 24.06 |
| KRH21221 | Soybean | nucleus | 18.29 | 19.15 |
| KRH40048 | Soybean | cytosol | 6.1 | 14.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:842955 | ProteinID:AAG52158.1 | ProteinID:AEE34501.1 | ArrayExpress:AT1G66370 |
| EnsemblPlantsGene:AT1G66370 | RefSeq:AT1G66370 | TAIR:AT1G66370 | RefSeq:AT1G66370-TAIR-G | EnsemblPlants:AT1G66370.1 | TAIR:AT1G66370.1 |
| EMBL:AY008378 | EMBL:AY519566 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009753 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0031540 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| Symbol:MYB113 | InterPro:Myb_dom | RefSeq:NP_176811.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF526 | UniProt:Q9FNV9 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A4901 | : | : | : |
Description
MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
Coordinates
chr1:+:24753589..24754761
Molecular Weight (calculated)
28309.0 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.665
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.