Factsheet for VIT_14s0006g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g01340.t01	Wine grape	nucleus	86.83	88.28
CDY72660	Canola	nucleus	37.04	68.7
AT1G66380.1	Thale cress	nucleus	39.09	68.35
VIT_02s0033g00370.t01	Wine grape	nucleus	24.69	63.83
VIT_14s0006g01280.t01	Wine grape	nucleus	62.14	62.14
VIT_02s0033g00450.t01	Wine grape	nucleus	39.51	60.76
CDY72006	Canola	nucleus	41.15	57.14
KRH01212	Soybean	nucleus	41.56	53.44
KRH40047	Soybean	nucleus	46.5	47.88
VIT_02s0033g00400.t01	Wine grape	nucleus	43.62	47.32
CDY70737	Canola	nucleus	44.03	46.93
KRH40053	Soybean	nucleus	45.27	46.81
KRH01217	Soybean	nucleus	44.03	46.32
VIT_02s0033g00410.t01	Wine grape	nucleus	47.33	46.0
VIT_02s0033g00430.t01	Wine grape	nucleus	42.39	45.98
KRH40049	Soybean	nucleus	44.44	45.57
CDX96151	Canola	nucleus	45.68	44.94
Bra004162.1-P	Field mustard	nucleus	45.68	44.94
VIT_02s0033g00390.t01	Wine grape	nucleus	48.56	44.53
CDY49630	Canola	nucleus	43.21	43.93
Solyc10g086270.1.1	Tomato	nucleus	46.5	43.63
AT1G56650.1	Thale cress	nucleus	44.44	43.55
Solyc10g086290.1.1	Tomato	nucleus	47.33	43.4
CDY55040	Canola	nucleus	44.44	43.37
AT1G66370.1	Thale cress	nucleus	43.62	43.09
CDY58386	Canola	nucleus, plastid	44.03	42.97
Bra039763.1-P	Field mustard	nucleus	44.03	42.97
AT1G66390.1	Thale cress	nucleus	44.03	42.97
Bra001917.1-P	Field mustard	nucleus	43.62	42.57
Solyc10g086250.1.1	Tomato	nucleus	48.15	42.55
VIT_02s0033g00460.t01	Wine grape	mitochondrion	34.57	42.21
VIT_01s0011g01190.t01	Wine grape	nucleus	36.21	39.82
KRG93566	Soybean	nucleus	41.15	39.53
VIT_01s0011g01200.t01	Wine grape	nucleus	33.33	38.94
Solyc10g086260.1.1	Tomato	nucleus	42.8	37.96
CDY53214	Canola	nucleus	41.98	36.82
PGSC0003DMT400036281	Potato	extracellular	22.22	25.96
PGSC0003DMT400036284	Potato	nucleus	22.22	25.47
KRH40048	Soybean	cytosol	9.88	23.08
KRH21221	Soybean	nucleus	20.58	21.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243253	wikigene:100243253	MapMan:15.5.2.1	ProteinID:ACL97979	ProteinID:ACL97979.1
ProteinID:ACL97981	ProteinID:ACL97981.1	EMBL:AM444005	UniProt:B8YPF8	ProteinID:CAN63069	ProteinID:CAN63069.1
ProteinID:CBI33525	ProteinID:CBI33525.3	EMBL:FJ556912	EMBL:FJ556914	EMBL:FN596245	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYBA6	wikigene:MYBA6	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00019226B0	ArrayExpress:VIT_14s0006g01290	EnsemblPlantsGene:VIT_14s0006g01290	EnsemblPlants:VIT_14s0006g01290.t01	unigene:Vvi.25954
RefSeq:XP_002274992	RefSeq:XP_002274992.1	SEG:seg	:	:	:

Description

R2R3 MYBA6 transcription factor splice variant 1 [Source:UniProtKB/TrEMBL;Acc:B8YPF8]

Coordinates

chr14:+:16884620..16885710

Molecular Weight (calculated)

27816.9 Da

IEP (calculated)

9.834

GRAVY (calculated)

-0.740

Length

243 amino acids

Sequence
(BLAST)

001: MDGPSGVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI KRGKFKTDEV DLIIRLHKLL GNRWALIAGR LPGRTSNDVK
101: NYWNTHLSKK FFGKAVKDVA DKTAKVTVIK PRPRTFNKNL SYLKGKAAKE SDVQSADHTL SKPYSTPPLS EDGISWLDSL FSGKEGHKES TCFRNGSGKE
201: SISSFWDEEI SAATKVGETF VEENESDWNH FSFDMDLWDL LNA

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.