Factsheet for VIT_01s0011g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00370.t01	Wine grape	nucleus	23.08	51.06
VIT_01s0011g01190.t01	Wine grape	nucleus	50.48	47.51
VIT_02s0033g00450.t01	Wine grape	nucleus	34.62	45.57
VIT_14s0006g01290.t01	Wine grape	nucleus	38.94	33.33
VIT_14s0006g01280.t01	Wine grape	nucleus	38.46	32.92
KRH49229	Soybean	nucleus	35.1	32.3
VIT_02s0033g00400.t01	Wine grape	nucleus	34.62	32.14
KRH00082	Soybean	nucleus	34.62	31.86
VIT_14s0006g01340.t01	Wine grape	nucleus	36.54	31.8
VIT_02s0033g00430.t01	Wine grape	nucleus	34.13	31.7
VIT_02s0033g00410.t01	Wine grape	nucleus	35.58	29.6
VIT_02s0033g00390.t01	Wine grape	nucleus	37.02	29.06
VIT_02s0033g00460.t01	Wine grape	mitochondrion	27.4	28.64

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250744	wikigene:100250744	MapMan:15.5.2.1	ProteinID:CBI27225	ProteinID:CBI27225.3
UniProt:D7T9Q3	EMBL:FN595752	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100250744	wikigene:LOC100250744	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TMHMM:TMhelix	UniParc:UPI0001BE2CD2	ArrayExpress:VIT_01s0011g01200	EnsemblPlantsGene:VIT_01s0011g01200	EnsemblPlants:VIT_01s0011g01200.t01	RefSeq:XP_002275704
RefSeq:XP_002275704.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1030308..1032374

Molecular Weight (calculated)

24605.6 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.679

Length

208 amino acids

Sequence
(BLAST)

001: MGCPTALRKG CWTQEEDSLL RKYVKEFGEE NWKHIAAKSG LRRCRKSCRL RWLNYLRPNI KRGNFGADED DLIMRLHRLL GNRWSMIAGR IPGRTPNEIK
101: NYWKSYLSKK IASETNKNSV PVKHRTQSSA MDAERMGSAS ERKQGKEEEE DTVAFWRRLL SEAEYKEKFV WHDSCIPSIQ VQLFWFLSYP SFLFLWMLWM
201: ACDLSLNN

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.