Factsheet for VIT_14s0006g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g01290.t01	Wine grape	nucleus	88.28	86.83
VIT_02s0033g00370.t01	Wine grape	nucleus	25.1	63.83
AT1G66380.1	Thale cress	nucleus	35.15	60.43
CDY72660	Canola	nucleus	33.05	60.31
VIT_02s0033g00450.t01	Wine grape	nucleus	37.24	56.33
VIT_14s0006g01280.t01	Wine grape	nucleus	56.9	55.97
CDY72006	Canola	nucleus	36.4	49.71
KRH01212	Soybean	nucleus	37.66	47.62
KRH40047	Soybean	nucleus	42.26	42.8
KRH40053	Soybean	nucleus	41.42	42.13
VIT_02s0033g00410.t01	Wine grape	nucleus	43.93	42.0
KRH01217	Soybean	nucleus	39.75	41.13
VIT_02s0033g00390.t01	Wine grape	nucleus	45.19	40.75
VIT_02s0033g00400.t01	Wine grape	nucleus	38.08	40.62
KRH40049	Soybean	nucleus	40.17	40.51
CDY70737	Canola	nucleus	38.49	40.35
VIT_02s0033g00430.t01	Wine grape	nucleus	36.82	39.29
Solyc10g086290.1.1	Tomato	nucleus	43.1	38.87
CDX96151	Canola	nucleus	40.17	38.87
Bra004162.1-P	Field mustard	nucleus	40.17	38.87
AT1G56650.1	Thale cress	nucleus	39.75	38.31
Bra039763.1-P	Field mustard	nucleus	39.75	38.15
AT1G66390.1	Thale cress	nucleus	39.75	38.15
CDY49630	Canola	nucleus	38.08	38.08
Solyc10g086270.1.1	Tomato	nucleus	41.0	37.84
Solyc10g086250.1.1	Tomato	nucleus	43.51	37.82
VIT_01s0011g01190.t01	Wine grape	nucleus	34.73	37.56
AT1G66370.1	Thale cress	nucleus	38.49	37.4
CDY58386	Canola	nucleus, plastid	38.91	37.35
CDY55040	Canola	nucleus	38.91	37.35
Bra001917.1-P	Field mustard	nucleus	38.49	36.95
KRG93566	Soybean	nucleus	38.91	36.76
VIT_01s0011g01200.t01	Wine grape	nucleus	31.8	36.54
VIT_02s0033g00460.t01	Wine grape	mitochondrion	29.71	35.68
Solyc10g086260.1.1	Tomato	nucleus	38.08	33.21
CDY53214	Canola	nucleus	37.24	32.13
PGSC0003DMT400036281	Potato	extracellular	18.83	21.63
PGSC0003DMT400036284	Potato	nucleus	18.83	21.23
KRH40048	Soybean	cytosol	8.79	20.19
KRH21221	Soybean	nucleus	17.99	18.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:CBI33526	ProteinID:CBI33526.3	UniProt:D7TSQ4	EMBL:FN596245
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0001BE3AB4	ArrayExpress:VIT_14s0006g01340	EnsemblPlantsGene:VIT_14s0006g01340	EnsemblPlants:VIT_14s0006g01340.t01	:	:

Description

No Description!

Coordinates

chr14:+:17076633..17077705

Molecular Weight (calculated)

27608.2 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.902

Length

239 amino acids

Sequence
(BLAST)

001: MDGPSEVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI KRREFTTDEV DLIIRLHRLL GNRQAPKHQL PGRTSNDVKN
101: YWNTHQSKKY FGKAGKDVAD KTAKVTVINT CPRTFYKNLS YLKGKAAKES DVQSADHTLS KPYSTPPLSE DGFSWLDSLF SGKEGQKEST CFRDGSANES
201: ISSFWDEETP AATKVGETFL EEKESDWNHF SFDVDLWDL

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.